TY - JOUR
T1 - The Omics-Driven Machine Learning Path to Cost-Effective Precision Medicine in Chronic Kidney Disease
AU - Lopes, Marta B.
AU - Coletti, Roberta
AU - Duranton, Flore
AU - Glorieux, Griet
AU - Jaimes Campos, Mayra Alejandra
AU - Klein, Julie
AU - Ley, Matthias
AU - Perco, Paul
AU - Sampri, Alexia
AU - Tur-Sinai, Aviad
N1 - info:eu-repo/grantAgreement/FCT/CEEC INST 2ed/CEECINST%2F00042%2F2021%2FCP1773%2FCT0001/PT
info:eu-repo/grantAgreement/FCT/CEEC INST 2ed/CEECINST%2F00042%2F2021%2FCP1773%2FCT00010/PT
info:eu-repo/grantAgreement/FCT/Concurso de avaliação no âmbito do Programa Plurianual de Financiamento de Unidades de I&D (2017%2F2018) - Financiamento Base/UIDB%2F00297%2F2020/PT
info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00667%2F2020/PT
info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F00297%2F2020/PT
info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F00667%2F2020/PT
info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F00667%2F2020/PT
Funding information:
This study was supported by Österreichische Forschungsförderungsgesellschaft (911422), Horizon Europe Marie Skłodowska-Curie Action Doctoral Network, Wellcome Trust (HDRUK2023.0028), European Cooperation in Science and Technology (CA21165), Fundação para a Ciência e a Tecnologia (CEECINST/00042/2021, UIDB/00297/2020, UIDB/00667/2020, UIDP/00297/2020, UIDP/00667/2020).
This article is based upon work from COST Action PerMediK, CA21165,supported by COST (European Cooperation in Science and Technology).M.B.L. acknowledges support from the Portuguese foundation forScience and Technology (FCT) with references CEECINST/00042/2021,UIDB/00297/2020 (DOI: 10.54499/UIDB/00297/2020) and UIDP/00297/2020 (DOI:10.54499/UIDP/00297/2020) (NOVA Math), and UIDB/00667/2020 (DOI: 10.54499/UIDB/00667/2020) and UIDP/00667/2020 (DOI:10.54499/UIDP/00667/2020). (UNIDEMI). M.A.J.C.holds a doctoral grant through the DisCo-I project that has receivedfunding from the European Union’s Horizon Europe Marie Skłodowska-Curie Actions Doctoral Networks—Industrial Doctorates Programme(HORIZON—MSCA—2021—DN-ID) under grant agreement No101072828, funded by the European Union. F.D. and J.K. were supportedby ANR under the frame of ERA-PerMed (ERA-PERMED2022-202-KidneySign). A.S. was supported by the following funding: British HeartFoundation (RG/F/23/110103), NIHR Cambridge Biomedical ResearchCentre (NIHR203312) [*], BHF Chair Award (CH/12/2/29428), BHF Cambridge Centre for Research Excellence (RE/24/130011), and byHealth Data Research UK, which is funded by the UK Medical ResearchCouncil, Engineering and Physical Sciences Research Council, Economicand Social Research Council, Department of Health and Social Care(England), Chief Scientist Office of the Scottish Government Healthand Social Care Directorates, Health and Social Care Research andDevelopment Division (Welsh Government), Public Health Agency(Northern Ireland), British Heart Foundation and the Wellcome Trust(HDRUK2023.0028). M.L. and P.P. have received funding from theAustrian Research Promotion Agency (FFG) under grant agreementNo. 911422 (Delta4Tech). *The views expressed are those of the authorsand not necessarily those of the NIHR or the Department of Health andSocial Care.
Publisher Copyright:
© 2025 The Author(s). Proteomics published by Wiley-VCH GmbH.
PY - 2025/1/10
Y1 - 2025/1/10
N2 - Chronic kidney disease (CKD) poses a significant and growing global health challenge, making early detection and slowing disease progression essential for improving patient outcomes. Traditional diagnostic methods such as glomerular filtration rate and proteinuria are insufficient to capture the complexity of CKD. In contrast, omics technologies have shed light on the molecular mechanisms of CKD, helping to identify biomarkers for disease assessment and management. Artificial intelligence (AI) and machine learning (ML) could transform CKD care, enabling biomarker discovery for early diagnosis and risk prediction, and personalized treatment. By integrating multi-omics datasets, AI can provide real-time, patient-specific insights, improve decision support, and optimize cost efficiency by early detection and avoidance of unnecessary treatments. Multidisciplinary collaborations and sophisticated ML methods are essential to advance diagnostic and therapeutic strategies in CKD. This review presents a comprehensive overview of the pipeline for translating CKD omics data into personalized treatment, covering recent advances in omics research, the role of ML in CKD, and the critical need for clinical validation of AI-driven discoveries to ensure their efficacy, relevance, and cost-effectiveness in patient care.
AB - Chronic kidney disease (CKD) poses a significant and growing global health challenge, making early detection and slowing disease progression essential for improving patient outcomes. Traditional diagnostic methods such as glomerular filtration rate and proteinuria are insufficient to capture the complexity of CKD. In contrast, omics technologies have shed light on the molecular mechanisms of CKD, helping to identify biomarkers for disease assessment and management. Artificial intelligence (AI) and machine learning (ML) could transform CKD care, enabling biomarker discovery for early diagnosis and risk prediction, and personalized treatment. By integrating multi-omics datasets, AI can provide real-time, patient-specific insights, improve decision support, and optimize cost efficiency by early detection and avoidance of unnecessary treatments. Multidisciplinary collaborations and sophisticated ML methods are essential to advance diagnostic and therapeutic strategies in CKD. This review presents a comprehensive overview of the pipeline for translating CKD omics data into personalized treatment, covering recent advances in omics research, the role of ML in CKD, and the critical need for clinical validation of AI-driven discoveries to ensure their efficacy, relevance, and cost-effectiveness in patient care.
KW - artificial intelligence
KW - chronic kidney disease
KW - cost-effectiveness
KW - machine learning
KW - multi-omics
UR - http://www.scopus.com/inward/record.url?scp=85214435788&partnerID=8YFLogxK
U2 - 10.1002/pmic.202400108
DO - 10.1002/pmic.202400108
M3 - Review article
C2 - 39790049
AN - SCOPUS:85214435788
SN - 1615-9853
VL - 25
JO - Proteomics
JF - Proteomics
IS - 11-12
M1 - e202400108
ER -