TY - JOUR
T1 - Label-free discrimination of T and B lymphocyte activation based on vibrational spectroscopy – A machine learning approach
AU - Ramalhete, Luis
AU - Araújo, Ruben
AU - Ferreira, Aníbal
AU - Calado, Cecília R.C.
N1 - Funding Information:
This research was funded by project grant DSAIPA/DS/0117/2020 and PTDC/EQU-EQU/3708/2021 supported by Fundação para a Ciência e a Tecnologia . Portugal, and by the project grant NeproMD/ISEL/2020 financed by Instituto Politécnico de Lisboa . Portugal. The present work was conducted in the Engineering & Health Laboratory, the result from a collaboration protocol established between Universidade Católica Portuguesa and Instituto Politécnico de Lisboa.
Publisher Copyright:
© 2023 Elsevier B.V.
PY - 2023/5
Y1 - 2023/5
N2 - B and T-lymphocytes are major players of the specific immune system, responsible by an efficient response to target antigens. Despite the high relevance of these cells’ activation in diverse human pathophysiological processes, its analysis in clinical context presents diverse constraints. In the present work, MIR spectroscopy was used to acquire the cells molecular profile in a label-free, simple, rapid, economic, and high-throughput mode. Recurring to machine learning algorithms MIR data was subsequently evaluated. Models were developed based on specific spectral bands as selected by Gini index and the Fast Correlation Based Filter. To determine if it was, possible to predict from the spectra, if B and T lymphocyte were activated, and what was the molecular fingerprint of T- or B- lymphocyte activation. The molecular composition of activated lymphocytes was so different from naïve cells, that very good prediction models were developed with whole spectra (with AUC=0.98). Activated B lymphocytes also present a very distinct molecular profile in relation to activated T lymphocytes, leading to excellent prediction models, especially if based on target bands (AUC=0.99). The identification of critical target bands, according to the metabolic differences between B and T lymphocytes and in association with the molecular mechanism of the activation process highlighted bands associated to lipids and glycogen levels. The method developed presents therefore, appealing characteristics to promote a new diagnostic tool to analyze and discriminate B from T-lymphocytes.
AB - B and T-lymphocytes are major players of the specific immune system, responsible by an efficient response to target antigens. Despite the high relevance of these cells’ activation in diverse human pathophysiological processes, its analysis in clinical context presents diverse constraints. In the present work, MIR spectroscopy was used to acquire the cells molecular profile in a label-free, simple, rapid, economic, and high-throughput mode. Recurring to machine learning algorithms MIR data was subsequently evaluated. Models were developed based on specific spectral bands as selected by Gini index and the Fast Correlation Based Filter. To determine if it was, possible to predict from the spectra, if B and T lymphocyte were activated, and what was the molecular fingerprint of T- or B- lymphocyte activation. The molecular composition of activated lymphocytes was so different from naïve cells, that very good prediction models were developed with whole spectra (with AUC=0.98). Activated B lymphocytes also present a very distinct molecular profile in relation to activated T lymphocytes, leading to excellent prediction models, especially if based on target bands (AUC=0.99). The identification of critical target bands, according to the metabolic differences between B and T lymphocytes and in association with the molecular mechanism of the activation process highlighted bands associated to lipids and glycogen levels. The method developed presents therefore, appealing characteristics to promote a new diagnostic tool to analyze and discriminate B from T-lymphocytes.
KW - B lymphocytes
KW - Cellular activation
KW - Machine learning
KW - MIR spectroscopy
KW - Molecular fingerprint
KW - T lymphocytes
UR - http://www.scopus.com/inward/record.url?scp=85153086894&partnerID=8YFLogxK
U2 - 10.1016/j.vibspec.2023.103529
DO - 10.1016/j.vibspec.2023.103529
M3 - Article
AN - SCOPUS:85153086894
SN - 0924-2031
VL - 126
JO - Vibrational Spectroscopy
JF - Vibrational Spectroscopy
M1 - 103529
ER -