Genetic diversity of norovirus in children under 5 years of age with acute gastroenteritis from Angola

A. Esteves, J. Nordgren, C. Tavares, F. Fortes, R. DImbu, N. Saraiva, C. Istrate

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Norovirus (NoV) is a major cause of acute gastroenteritis (AGE). In this study, we investigated the genetic diversity of NoV strains identified in children under 5 years of age with AGE in four provinces of Angola. Faecal samples from 343 children were screened for NoV by an in house real-time PCR assay and genotyping was performed by partial capsid gene sequencing. NoV was detected in 17.4% (58/334) of the samples, with high detection rates in children <6 months old (19%) and in children aged 12-24 months (23%). Genotype diversity was large, as demonstrated by the 11 identified genotypes. GII.4 was the predominant genotype (20% of all NoV-positive samples), followed by GII.6 (15%), GI.3 (12%), GII.7 (10%) and by other genotypes to a lesser extent. Two GII.4 variants, New Orleans 2009 and Sydney 2012, were detected and several genetic clusters were observed for genotypes GI.3, GII.6 and GII.7. The present study shows high detection rates and genetic diversity of circulating NoV genotypes in paediatric AGE samples from Angola. This information emphasises the importance of continuous assessment of NoV burden and evolution in the target population.

Original languageEnglish
Pages (from-to)551-557
Number of pages7
JournalEpidemiology and Infection
Volume146
Issue number5
DOIs
Publication statusPublished - 1 Apr 2018

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Angola
Norovirus
Gastroenteritis
Genotype
Health Services Needs and Demand
Capsid
Real-Time Polymerase Chain Reaction
Pediatrics

Keywords

  • Acute gastroenteritis
  • Angola
  • children
  • norovirus

Cite this

Esteves, A. ; Nordgren, J. ; Tavares, C. ; Fortes, F. ; DImbu, R. ; Saraiva, N. ; Istrate, C. / Genetic diversity of norovirus in children under 5 years of age with acute gastroenteritis from Angola. In: Epidemiology and Infection. 2018 ; Vol. 146, No. 5. pp. 551-557.
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Genetic diversity of norovirus in children under 5 years of age with acute gastroenteritis from Angola. / Esteves, A.; Nordgren, J.; Tavares, C.; Fortes, F.; DImbu, R.; Saraiva, N.; Istrate, C.

In: Epidemiology and Infection, Vol. 146, No. 5, 01.04.2018, p. 551-557.

Research output: Contribution to journalArticle

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AU - Saraiva, N.

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