TY - JOUR
T1 - Analysis of domain shift in whole prostate gland, zonal and lesions segmentation and detection, using multicentric retrospective data
AU - ProCAncer-I Consortium
AU - Rodrigues, Nuno Miguel
AU - Almeida, José Guilherme de
AU - Verde, Ana Sofia Castro
AU - Gaivão, Ana Mascarenhas
AU - Bilreiro, Carlos
AU - Santiago, Inês
AU - Ip, Joana
AU - Belião, Sara
AU - Moreno, Raquel
AU - Matos, Celso
AU - Vanneschi, Leonardo
AU - Tsiknakis, Manolis
AU - Marias, Kostas
AU - Regge, Daniele
AU - Silva, Sara
AU - Papanikolaou, Nickolas
N1 - info:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04152%2F2020/PT#
Rodrigues, N. M., Almeida, J. G. D., Verde, A. S. C., Gaivão, A. M., Bilreiro, C., Santiago, I., Ip, J., Belião, S., Moreno, R., Matos, C., Vanneschi, L., Tsiknakis, M., Marias, K., Regge, D., Silva, S., & Papanikolaou, N. (2024). Analysis of domain shift in whole prostate gland, zonal and lesions segmentation and detection, using multicentric retrospective data. Computers in Biology and Medicine, 171, 1-22. Article 108216. https://doi.org/10.1016/j.compbiomed.2024.108216 --- This work was partially supported by the Fundação para a Ciência e a Tecnologia, Portugal, through funding of the LASIGE Research Unit refs. UIDB/00408/2020 (https://doi.org/10.54499/UIDB/00408/2020), UIDP/00408/2020 (https://doi.org/10.54499/UIDP/00408/2020) and UIDB/04152/2020 - Centro de Investigação em Gestão de Informação (MagIC)/NOVA IMS. Nuno M. Rodrigues was supported by PhD Grant 2021/05322/BD. All authors except Nuno Rodrigues, Leonardo Vanneschi and Sara Silva, were supported by the European Union H2020: ProCAncer-I project (EU grant 952159)
PY - 2024/3/1
Y1 - 2024/3/1
N2 - Despite being one of the most prevalent forms of cancer, prostate cancer (PCa) shows a significantly high survival rate, provided there is timely detection and treatment. Computational methods can help make this detection process considerably faster and more robust. However, some modern machine-learning approaches require accurate segmentation of the prostate gland and the index lesion. Since performing manual segmentations is a very time-consuming task, and highly prone to inter-observer variability, there is a need to develop robust semi-automatic segmentation models. In this work, we leverage the large and highly diverse ProstateNet dataset, which includes 638 whole gland and 461 lesion segmentation masks, from 3 different scanner manufacturers provided by 14 institutions, in addition to other 3 independent public datasets, to train accurate and robust segmentation models for the whole prostate gland, zones and lesions. We show that models trained on large amounts of diverse data are better at generalizing to data from other institutions and obtained with other manufacturers, outperforming models trained on single-institution single-manufacturer datasets in all segmentation tasks. Furthermore, we show that lesion segmentation models trained on ProstateNet can be reliably used as lesion detection models.
AB - Despite being one of the most prevalent forms of cancer, prostate cancer (PCa) shows a significantly high survival rate, provided there is timely detection and treatment. Computational methods can help make this detection process considerably faster and more robust. However, some modern machine-learning approaches require accurate segmentation of the prostate gland and the index lesion. Since performing manual segmentations is a very time-consuming task, and highly prone to inter-observer variability, there is a need to develop robust semi-automatic segmentation models. In this work, we leverage the large and highly diverse ProstateNet dataset, which includes 638 whole gland and 461 lesion segmentation masks, from 3 different scanner manufacturers provided by 14 institutions, in addition to other 3 independent public datasets, to train accurate and robust segmentation models for the whole prostate gland, zones and lesions. We show that models trained on large amounts of diverse data are better at generalizing to data from other institutions and obtained with other manufacturers, outperforming models trained on single-institution single-manufacturer datasets in all segmentation tasks. Furthermore, we show that lesion segmentation models trained on ProstateNet can be reliably used as lesion detection models.
KW - ProstateNet
KW - Prostate segmentation
KW - Lesion segmentation
KW - Zone segmentation
UR - http://www.scopus.com/inward/record.url?scp=85186649358&partnerID=8YFLogxK
U2 - 10.1016/j.compbiomed.2024.108216
DO - 10.1016/j.compbiomed.2024.108216
M3 - Article
C2 - 38442555
SN - 0010-4825
VL - 171
SP - 1
EP - 22
JO - Computers in Biology and Medicine
JF - Computers in Biology and Medicine
M1 - 108216
ER -