• 26 Citations
  • 3 h-Index
20102020
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Research Output at NOVA 2010 2020

  • 26 Citations
  • 3 h-Index
  • 18 Article
  • 3 Chapter
  • 2 Meeting Abstract
  • 1 Editorial
2020

Comparing Peptide Spectra Matches Across Search Engines

Matthiesen, R., Prieto, G. & Beck, H. C., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 133-143 11 p.

Research output: Contribution to journalArticle

Search Engine
Peptides
Databases
Complex Mixtures
Trypsin

Data Imputation in Merged Isobaric Labeling-Based Relative Quantification Datasets

Palstrøm, N. B., Matthiesen, R. & Beck, H. C., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 297-308 12 p.

Research output: Contribution to journalArticle

Proteomics
Firearms
Proteins
Mass Spectrometry
Datasets

Extra-cellular vesicles carry proteome of cancer hallmarks

Carvalho, A. S., Baeta, H., Silva, B. C., Moraes, M. C. S., Bodo, C., Beck, H. C., Rodriguez, M. S., Saraswat, M., Pandey, A. & Matthiesen, R., 1 Jan 2020, In : Frontiers in bioscience (Landmark edition). 25, p. 398-436 39 p.

Research output: Contribution to journalArticle

Proteome
Cells
Tumors
Neoplasms
Oncogene Proteins

Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides

Bunkenborg, J. & Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 199-230 32 p.

Research output: Contribution to journalArticle

Peptides
Tandem Mass Spectrometry
Search Engine
Protein Databases
Amino Acid Sequence

Introduction to Mass Spectrometry-Based Proteomics

Matthiesen, R. & Bunkenborg, J., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 1-58 58 p.

Research output: Contribution to journalArticle

Proteomics
Mass Spectrometry
Proteome
Technology
Proteins

LC-MS Spectra Processing

Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 59-77 19 p.

Research output: Contribution to journalArticle

Software
Databases

Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

Matthiesen, R. & Carvalho, A. S., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 161-197 37 p.

Research output: Contribution to journalArticle

Proteomics
Mass Spectrometry
Proteins
Post Translational Protein Processing
Programming Languages

Preface

Matthiesen, R., 2020, In : Methods in Molecular Biology. 2051, p. v

Research output: Contribution to journalEditorial

Solution to Dark Matter Identified by Mass-Tolerant Database Search

Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 231-240 10 p.

Research output: Contribution to journalArticle

Reward
Proteomics
Mass Spectrometry
Head
Databases
2019

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum

Santos, J. D., Canato, S., Carvalho, A. S., Botelho, H. M., Aloria, K., Amaral, M. D., Matthiesen, R., Falcao, A. O. & Farinha, C. M., Apr 2019, In : Cells. 8, 4, 353.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)

Interplay between SUMOylation and NEDDylation regulates RPL11 localization and function

El Motiam, A., Vidal, S., de la Cruz-Herrera, C. F., Da Silva-Álvarez, S., Baz-Martínez, M., Seoane, R., Vidal, A., Rodríguez, M. S., Xirodimas, D. P., Carvalho, A. S., Beck, H. C., Matthiesen, R., Collado, M. & Rivas, C., Jan 2019, In : Faseb Journal. 33, 1, p. 643-651 9 p., fj201800341RR.

Research output: Contribution to journalArticle

Sumoylation
Ubiquitin
Ubiquitins
Small Ubiquitin-Related Modifier Proteins
Down-Regulation
1 Downloads (Pure)

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma

Gomes, S., Cavadas, B., Ferreira, J. C., Marques, P. I., Monteiro, C., Sucena, M., Sousa, C., Vaz Rodrigues, L., Teixeira, G., Pinto, P., Tavares de Abreu, T., Bárbara, C., Semedo, J., Mota, L., Carvalho, A. S., Matthiesen, R., Pereira, L. & Seixas, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 12838.

Research output: Contribution to journalArticle

Open Access
File
Microbiota
Squamous Cell Carcinoma
Adenocarcinoma
Proteobacteria
Lung Neoplasms
2018
3 Citations (Scopus)

Proteomic interaction profiling reveals KIFC1 as a factor involved in early targeting of F508del-CFTR to degradation

Canato, S., Santos, J. D., Carvalho, A. S., Aloria, K., Amaral, M. D., Matthiesen, R., Falcao, A. O. & Farinha, C. M., 2018, (Accepted/In press) In : Cellular and Molecular Life Sciences.

Research output: Contribution to journalArticle

Kinesin
Quality Control
Proteomics
Endoplasmic Reticulum
Arginine

PROTEOMIC INTERACTION PROFILING REVEALS KIFC1 AS A FACTOR INVOLVED IN EARLY TARGETING OF F508DEL-CFTR TO DEGRADATION

Canato, S., Santos, J. D., Carvalho, A. S., Aloria, K., Matthiesen, R., Amaral, M. D., Falcao, A. O. & Farinha, C. M., Sep 2018, In : Pediatric Pulmonology. 53, p. 159-160

Research output: Contribution to journalMeeting Abstract

1 Citation (Scopus)
2 Downloads (Pure)

The antitumor activity of a lead thioxanthone is associated with alterations in cholesterol localization

Lima, R. T., Sousa, D., Gomes, A. S., Mendes, N., Matthiesen, R., Pedro, M., Marques, F., Pinto, M. M., Sousa, E. & Helena Vasconcelos, M., 12 Dec 2018, In : Molecules. 23, 12, 3301.

Research output: Contribution to journalArticle

Open Access
File
cholesterol
Heterografts
mice
Tumors
Cholesterol
2017
2 Citations (Scopus)

Bronchoalveolar lavage: Quantitative mass spectrometry-based proteomics analysis in lung diseases: Methods in Molecular Biology

Carvalho, A. S. & Matthiesen, R., 2017, Methods in Molecular Biology. Humana Press Inc, Vol. 1619. p. 487-494 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bronchoalveolar Lavage
Proteomics
Lung Diseases
Molecular Biology
Mass Spectrometry
11 Citations (Scopus)

Bronchoalveolar Lavage Proteomics in Patients with Suspected Lung Cancer

Carvalho, A. S., Cuco, C. M., Lavareda, C., Miguel, F., Ventura, M., Almeida, S., Pinto, P., de Abreu, T. T., Rodrigues, L. V., Seixas, S., Bárbara, C., Azkargorta, M., Elortza, F., Semedo, J., Field, J. K., Mota, L. & Matthiesen, R., 7 Feb 2017, In : Scientific Reports. 7, 42190.

Research output: Contribution to journalArticle

Open Access
File
Bronchoalveolar Lavage
Proteomics
Lung Neoplasms
Biomarkers
Bronchoscopy

CHAPTER 6: Identification and Localization of Post-Translational Modifications by High-Resolution Mass Spectrometry

Matthiesen, R. & Carvalho, A. S., 2017, Proteome Informatics. 5 ed. Royal Society of Chemistry, Vol. 2017-January. p. 116-132 17 p. (New Developments in Mass Spectrometry; vol. 2017-January, no. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry
Neurodegenerative diseases
Biomarkers
Proteins
Chemical analysis
1 Citation (Scopus)
14 Downloads (Pure)

Evening and morning alterations in Obstructive Sleep Apnea red blood cell proteome

Feliciano, A., Vaz, F., Valentim-Coelho, C., Torres, V. M., Silva, R., Prosinecki, V., Alexandre, B. M., Almeida, A., Almeida-Marques, C., Carvalho, A. S., Matthiesen, R., Malhotra, A., Pinto, P., Bárbara, C. & Penque, D., Apr 2017, In : Data in brief. 11, p. 103-110 8 p.

Research output: Contribution to journalArticle

Open Access
File
Obstructive Sleep Apnea
Proteome
Erythrocytes
Two-Dimensional Difference Gel Electrophoresis
Proteins
3 Citations (Scopus)

Evening and morning peroxiredoxin-2 redox/oligomeric state changes in obstructive sleep apnea red blood cells: Correlation with polysomnographic and metabolic parameters

Feliciano, A., Vaz, F., Torres, V. M., Valentim-Coelho, C., Silva, R., Prosinecki, V., Alexandre, B. M., Carvalho, A. S., Matthiesen, R., Malhotra, A., Pinto, P., Bárbara, C. & Penque, D., Feb 2017, In : Biochimica Et Biophysica Acta. 1863, 2, p. 621-629 9 p.

Research output: Contribution to journalArticle

Peroxiredoxins
Obstructive Sleep Apnea
Oxidation-Reduction
Erythrocytes
Pressure

Modulation of protein traffic networks to rescue F508del-CFTR from the endoplasmic reticulum

Canato, S., Carvalho, A. S., Botelho, H. M., Aloria, K., Matthiesen, R., Amaral, M. D., Falcao, A. & Farinha, C. M., Sep 2017, In : Febs Journal. 284, p. 297-298 2 p.

Research output: Contribution to journalMeeting Abstract

3 Citations (Scopus)

Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes

Jones-Dias, D., Carvalho, A. S., Moura, I. B., Manageiro, V., Igrejas, G., Caniça, M. & Matthiesen, R., 6 Mar 2017, In : Journal of Proteomics. 156, p. 20-28 9 p.

Research output: Contribution to journalArticle

Peptidoglycan
Proteome
Tetracycline
Escherichia coli
Anti-Bacterial Agents

Red blood cells in clinical proteomics: Methods in Molecular Biology

Carvalho, A. S., Rodriguez, M. S. & Matthiesen, R., 2017, Red blood cells in clinical proteomics: Methods in Molecular Biology. Humana Press Inc, Vol. 1619. p. 173-181 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics
Molecular Biology
Erythrocytes
Cell Membrane
Proteome
2010

Differential expression of alpha-2,3-sialyltransferases and alpha-1,3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells

Carvalho, A. S., Harduin-Lepers, A., Magalhães, A., Machado, E., Mendes, N., Lopes-Costa, T., Matthiesen, R., Almeida, R., Costa, J. & Reis, C. A., Jan 2010, In : International Journal Of Biochemistry & Cell Biology. 42, 1, p. 80-9 10 p.

Research output: Contribution to journalArticle

beta-galactoside alpha-2,3-sialyltransferase
Cells
Carcinoma
Fucosyltransferases
Sialyltransferases