No photo of Rune Matthiesen
  • Campo Mártires da Pátria, 130

    1169-056 Lisboa

    Portugal

  • 2227 Citations
  • 23 h-Index
20102020

Research output per year

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Research Output at NOVA

2020

Comparing Peptide Spectra Matches Across Search Engines

Matthiesen, R., Prieto, G. & Beck, H. C., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 133-143 11 p.

Research output: Contribution to journalArticle

Data Imputation in Merged Isobaric Labeling-Based Relative Quantification Datasets

Palstrøm, N. B., Matthiesen, R. & Beck, H. C., 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 297-308 12 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Deep sequencing analysis reveals distinctive non-coding RNAs when comparing tumor multidrug-resistant cells and extracellular vesicles with drug-sensitive counterparts

Sousa, D., Matthiesen, R., Lima, R. T. & Helena Vasconcelos, M., 2020, In : Cancers. 12, 1, 200.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
2 Downloads (Pure)

Extra-cellular vesicles carry proteome of cancer hallmarks

Carvalho, A. S., Baeta, H., Silva, B. C., Moraes, M. C. S., Bodo, C., Beck, H. C., Rodriguez, M. S., Saraswat, M., Pandey, A. & Matthiesen, R., 1 Jan 2020, In : Frontiers in bioscience (Landmark edition). 25, p. 398-436 39 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides

Bunkenborg, J. & Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 199-230 32 p.

Research output: Contribution to journalArticle

Introduction to Mass Spectrometry-Based Proteomics

Matthiesen, R. & Bunkenborg, J., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 1-58 58 p.

Research output: Contribution to journalArticle

LC-MS Spectra Processing

Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 59-77 19 p.

Research output: Contribution to journalArticle

Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

Matthiesen, R. & Carvalho, A. S., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 161-197 37 p.

Research output: Contribution to journalArticle

Preface

Matthiesen, R., 2020, In : Methods in Molecular Biology. 2051, p. v

Research output: Contribution to journalEditorial

Solution to Dark Matter Identified by Mass-Tolerant Database Search

Matthiesen, R., 1 Jan 2020, In : Methods In Molecular Biology (Clifton, N.J.). 2051, p. 231-240 10 p.

Research output: Contribution to journalArticle

WNK1 phosphorylation sites in TBC1D1 and TBC1D4 modulate cell surface expression of GLUT1

Henriques, A. F. A., Matos, P., Carvalho, A. S., Azkargorta, M., Elortza, F., Matthiesen, R. & Jordan, P., 15 Jan 2020, In : Archives of Biochemistry and Biophysics. 679, 108223.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
2019

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum

Santos, J. D., Canato, S., Carvalho, A. S., Botelho, H. M., Aloria, K., Amaral, M. D., Matthiesen, R., Falcao, A. O. & Farinha, C. M., Apr 2019, In : Cells. 8, 4, 353.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

Interplay between SUMOylation and NEDDylation regulates RPL11 localization and function

El Motiam, A., Vidal, S., de la Cruz-Herrera, C. F., Da Silva-Álvarez, S., Baz-Martínez, M., Seoane, R., Vidal, A., Rodríguez, M. S., Xirodimas, D. P., Carvalho, A. S., Beck, H. C., Matthiesen, R., Collado, M. & Rivas, C., Jan 2019, In : Faseb Journal. 33, 1, p. 643-651 9 p., fj201800341RR.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma

Gomes, S., Cavadas, B., Ferreira, J. C., Marques, P. I., Monteiro, C., Sucena, M., Sousa, C., Vaz Rodrigues, L., Teixeira, G., Pinto, P., Tavares de Abreu, T., Bárbara, C., Semedo, J., Mota, L., Carvalho, A. S., Matthiesen, R., Pereira, L. & Seixas, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 12838.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
3 Downloads (Pure)
2018

Proteomic interaction profiling reveals KIFC1 as a factor involved in early targeting of F508del-CFTR to degradation

Canato, S., Santos, J. D., Carvalho, A. S., Aloria, K., Amaral, M. D., Matthiesen, R., Falcao, A. O. & Farinha, C. M., 2018, (Accepted/In press) In : Cellular and Molecular Life Sciences.

Research output: Contribution to journalArticle

4 Citations (Scopus)

PROTEOMIC INTERACTION PROFILING REVEALS KIFC1 AS A FACTOR INVOLVED IN EARLY TARGETING OF F508DEL-CFTR TO DEGRADATION

Canato, S., Santos, J. D., Carvalho, A. S., Aloria, K., Matthiesen, R., Amaral, M. D., Falcao, A. O. & Farinha, C. M., Sep 2018, In : Pediatric Pulmonology. 53, p. 159-160

Research output: Contribution to journalMeeting Abstract

The antitumor activity of a lead thioxanthone is associated with alterations in cholesterol localization

Lima, R. T., Sousa, D., Gomes, A. S., Mendes, N., Matthiesen, R., Pedro, M., Marques, F., Pinto, M. M., Sousa, E. & Helena Vasconcelos, M., 12 Dec 2018, In : Molecules. 23, 12, 3301.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)
2017

Bronchoalveolar lavage: Quantitative mass spectrometry-based proteomics analysis in lung diseases: Methods in Molecular Biology

Carvalho, A. S. & Matthiesen, R., 2017, Methods in Molecular Biology. Humana Press Inc, Vol. 1619. p. 487-494 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Bronchoalveolar Lavage Proteomics in Patients with Suspected Lung Cancer

Carvalho, A. S., Cuco, C. M., Lavareda, C., Miguel, F., Ventura, M., Almeida, S., Pinto, P., de Abreu, T. T., Rodrigues, L. V., Seixas, S., Bárbara, C., Azkargorta, M., Elortza, F., Semedo, J., Field, J. K., Mota, L. & Matthiesen, R., 7 Feb 2017, In : Scientific Reports. 7, 42190.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)

CHAPTER 6: Identification and Localization of Post-Translational Modifications by High-Resolution Mass Spectrometry

Matthiesen, R. & Carvalho, A. S., 2017, Proteome Informatics. 5 ed. Royal Society of Chemistry, Vol. 2017-January. p. 116-132 17 p. (New Developments in Mass Spectrometry; vol. 2017-January, no. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evening and morning alterations in Obstructive Sleep Apnea red blood cell proteome

Feliciano, A., Vaz, F., Valentim-Coelho, C., Torres, V. M., Silva, R., Prosinecki, V., Alexandre, B. M., Almeida, A., Almeida-Marques, C., Carvalho, A. S., Matthiesen, R., Malhotra, A., Pinto, P., Bárbara, C. & Penque, D., Apr 2017, In : Data in brief. 11, p. 103-110 8 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
16 Downloads (Pure)

Evening and morning peroxiredoxin-2 redox/oligomeric state changes in obstructive sleep apnea red blood cells: Correlation with polysomnographic and metabolic parameters

Feliciano, A., Vaz, F., Torres, V. M., Valentim-Coelho, C., Silva, R., Prosinecki, V., Alexandre, B. M., Carvalho, A. S., Matthiesen, R., Malhotra, A., Pinto, P., Bárbara, C. & Penque, D., Feb 2017, In : Biochimica Et Biophysica Acta. 1863, 2, p. 621-629 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Modulation of protein traffic networks to rescue F508del-CFTR from the endoplasmic reticulum

Canato, S., Carvalho, A. S., Botelho, H. M., Aloria, K., Matthiesen, R., Amaral, M. D., Falcao, A. & Farinha, C. M., Sep 2017, In : Febs Journal. 284, p. 297-298 2 p.

Research output: Contribution to journalMeeting Abstract

Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes

Jones-Dias, D., Carvalho, A. S., Moura, I. B., Manageiro, V., Igrejas, G., Caniça, M. & Matthiesen, R., 6 Mar 2017, In : Journal of Proteomics. 156, p. 20-28 9 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Red blood cells in clinical proteomics: Methods in Molecular Biology

Carvalho, A. S., Rodriguez, M. S. & Matthiesen, R., 2017, Red blood cells in clinical proteomics: Methods in Molecular Biology. Humana Press Inc, Vol. 1619. p. 173-181 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Differential expression of alpha-2,3-sialyltransferases and alpha-1,3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells

Carvalho, A. S., Harduin-Lepers, A., Magalhães, A., Machado, E., Mendes, N., Lopes-Costa, T., Matthiesen, R., Almeida, R., Costa, J. & Reis, C. A., Jan 2010, In : International Journal Of Biochemistry & Cell Biology. 42, 1, p. 80-9 10 p.

Research output: Contribution to journalArticle