Marta Isabel Belchior Lopes

CMA Research Group - Statistics and Risk Management

Research Assistant, DM - Departamento de Matemática
CEEC Institucional, CMA - Centro de Matemática e Aplicações
Research Assistant, UNIDEMI - Unidade de Investigação e Desenvolvimento em Engenharia Mecânica e Industrial

Former affiliation

CEEC Institucional, NOVALincs

https://orcid.org/0000-0002-4135-1857

Emailmib.lopesfct.unlpt

DM - Departamento de Matemática
Faculdade de Ciências e Tecnologia/UNL
Edifício VII
Campus de Caparica
2829-516 Caparica
Portugal

Accepting PhD Students

PhD projects

Multi-omic networks in gliomas;

Forecasting shellfish contamination by marine biotoxins

h-index

Research activity per year

9 Article
6 Conference contribution
6 Review article
2 Chapter

23 results

2023
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
D’Elia, D., Truu, J., Lahti, L., Berland, M., Papoutsoglou, G., Ceci, M., Zomer, A., Lopes, M. B., Ibrahimi, E., Gruca, A., Nechyporenko, A., Frohme, M., Klammsteiner, T., Pau, E. C. D. S., Marcos-Zambrano, L. J., Hron, K., Pio, G., Simeon, A., Suharoschi, R., Moreno-Indias, I., & 21 othersTemko, A., Nedyalkova, M., Apostol, E. S., Truică, C. O., Shigdel, R., Telalović, J. H., Bongcam-Rudloff, E., Przymus, P., Jordamović, N. B., Falquet, L., Tarazona, S., Sampri, A., Isola, G., Pérez-Serrano, D., Trajkovik, V., Klucar, L., Loncar-Turukalo, T., Havulinna, A. S., Jansen, C., Bertelsen, R. J. & Claesson, M. J., Sept 2023, In: Frontiers in Microbiology. 14, 8 p., 1257002.
Research output: Contribution to journal › Article › peer-review

Open Access
File
6 Citations (Scopus)

13 Downloads (Pure)
A toolbox of machine learning software to support microbiome analysis
Marcos-Zambrano, L. J., López-Molina, V. M., Bakir-Gungor, B., Frohme, M., Karaduzovic-Hadziabdic, K., Klammsteiner, T., Ibrahimi, E., Lahti, L., Loncar-Turukalo, T., Dhamo, X., Simeon, A., Nechyporenko, A., Pio, G., Przymus, P., Sampri, A., Trajkovik, V., Lacruz-Pleguezuelos, B., Aasmets, O., Araújo, R., Anagnostopoulos, I., & 28 othersAydemir, Ö., Berland, M., Calle, M. L., Ceci, M., Duman, H., Gündoğdu, A., Havulinna, A. S., Kaka Bra, K. H. N., Kalluci, E., Karav, S., Lode, D., Lopes, M. B., May, P., Nap, B., Nedyalkova, M., Paciência, I., Pasic, L., Pujolassos, M., Shigdel, R., Susín, A., Thiele, I., Truică, C. O., Wilmes, P., Yilmaz, E., Yousef, M., Claesson, M. J., Truu, J. & Carrillo de Santa Pau, E., 22 Nov 2023, In: Frontiers in Microbiology. 14, 20 p., 1250806.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
4 Citations (Scopus)

25 Downloads (Pure)
Causal Graph Discovery for Explainable Insights on Marine Biotoxin Shellfish Contamination
Ribeiro, D., Ferraz, F., Lopes, M. B., Rodrigues, S., Costa, P. R., Vinga, S. & Carvalho, A. M., Nov 2023, Intelligent Data Engineering and Automated Learning – IDEAL 2023: 24th International Conference, Évora, Portugal, November 22–24, 2023, Proceedings. Quaresma, P., Camacho, D., Yin, H., Gonçalves, T., Julian, V. & Tallón-Ballesteros, A. J. (eds.). Cham: Springer, p. 483-494 12 p. (Lecture Notes in Computer Science; vol. 14404 LNCS).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods
Martins, S., Coletti, R. & Lopes, MB., Dec 2023, In: BioData Mining. 16, 1, 16 p., 26.
Research output: Contribution to journal › Article › peer-review

Open Access
File
1 Citation (Scopus)

14 Downloads (Pure)
Evaluating the Causal Role of Environmental Data in Shellfish Biotoxin Contamination on the Portuguese Coast
Baião, A. R., Peixoto, C., Lopes, M. B., Costa, P. R., Carvalho, A. M. & Vinga, S., Dec 2023, Progress in Artificial Intelligence: 22nd EPIA Conference on Artificial Intelligence, EPIA 2023, Faial Island, Azores, September 5–8, 2023, Proceedings, Part II. Moniz, N., Vale, Z., Cascalho, J., Silva, C. & Sebastião, R. (eds.). Cham: Springer, p. 325-337 13 p. (Lecture Notes in Computer Science; vol. 14116 LNAI).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization
Peixoto, C., Lopes, M. B., Martins, M., Casimiro, S., Sobral, D., Grosso, A. R., Abreu, C., Macedo, D., Costa, A. L., Pais, H., Alvim, C., Mansinho, A., Filipe, P., Costa, P. M. D., Fernandes, A., Borralho, P., Ferreira, C., Malaquias, J., Quintela, A., Kaplan, S., & 11 othersGolkaram, M., Salmans, M., Khan, N., Vijayaraghavan, R., Zhang, S., Pawlowski, T., Godsey, J., So, A., Liu, L., Costa, L. & Vinga, S., Dec 2023, In: BMC Bioinformatics. 24, 1, 23 p., 17.
Research output: Contribution to journal › Article › peer-review

Open Access
File
6 Citations (Scopus)

17 Downloads (Pure)
Machine learning approaches in microbiome research: challenges and best practices
Papoutsoglou, G., Tarazona, S., Lopes, M. B., Klammsteiner, T., Ibrahimi, E., Eckenberger, J., Novielli, P., Tonda, A., Simeon, A., Shigdel, R., Béreux, S., Vitali, G., Tangaro, S., Lahti, L., Temko, A., Claesson, M. J. & Berland, M., 22 Sept 2023, In: Frontiers in Microbiology. 14, 21 p., 1261889.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
13 Citations (Scopus)

19 Downloads (Pure)
Multi-omics Data Integration and Network Inference for Biomarker Discovery in Glioma
Coletti, R. & Lopes, M. B., Dec 2023, Progress in Artificial Intelligence: 22nd EPIA Conference on Artificial Intelligence, EPIA 2023, Faial Island, Azores, September 5–8, 2023, Proceedings, Part II. Moniz, N., Vale, Z., Cascalho, J., Silva, C. & Sebastião, R. (eds.). Cham: Springer, p. 247-259 13 p. (Lecture Notes in Computer Science; vol. 14116 LNAI).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Overview of data preprocessing for machine learning applications in human microbiome research
Ibrahimi, E., Lopes, M. B., Dhamo, X., Simeon, A., Shigdel, R., Hron, K., Stres, B., D’Elia, D., Berland, M. & Marcos-Zambrano, L. J., Oct 2023, In: Frontiers in Microbiology. 14, 8 p., 1250909.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
7 Citations (Scopus)

37 Downloads (Pure)
Regularized Generalized Linear Models to Disclose Host-Microbiome Associations in Colorectal Cancer
Ibrahimi, E., Norouzirad, M., Meto, M. & Lopes, M. B., 13 Dec 2023, ICoMS '23: Proceedings of the 2023 6th International Conference on Mathematics and Statistics. New York: ACM - Association for Computing Machinery, p. 98-102 5 p. (ICoMS: International Conference on Mathematics and Statistic).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access
2022

Bases de Dados e Big Data
Natário, I. & Lopes, M. B., Apr 2022, Novas Tecnologias em Saúde. Santos, J. P. & Vigário, R. (eds.). Cascais: Principia
Research output: Chapter in Book/Report/Conference proceeding › Chapter
Classification and biomarker selection in lower-grade glioma using robust sparse logistic regression applied to RNA-seq data
Carrilho, J. F. & Lopes, M. B., 31 Dec 2022, In: REVISTA BRASILEIRA DE BIOMETRIA. 40, 4, p. 371-381 11 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
1 Citation (Scopus)

59 Downloads (Pure)
Forecasting biotoxin contamination in mussels across production areas of the Portuguese coast with Artificial Neural Networks
Cruz, R. C., Costa, P. R., Krippahl, L. & Lopes, M. B., 5 Dec 2022, In: Knowledge-Based Systems. 257, 12 p., 109895.
Research output: Contribution to journal › Article › peer-review

Open Access
File
8 Citations (Scopus)

24 Downloads (Pure)
ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data
Jensch, A., Lopes, M. B., Vinga, S. & Radde, N., May 2022, In: Statistical Methods In Medical Research. 31, 5, p. 947-958 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
1 Citation (Scopus)

49 Downloads (Pure)
Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions
Patrício, A., Lopes, M. B., Costa, P. R., Costa, R. S., Henriques, R. & Martins, S. D. A. M. V., 30 Sept 2022, In: Toxins. 14, 10, 18 p., 679.
Research output: Contribution to journal › Article › peer-review

Open Access
File
3 Citations (Scopus)

25 Downloads (Pure)
2021
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
ML4 Microbiome & Lopes, M. B., 19 Feb 2021, In: Frontiers in Microbiology. 12, 634511.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
164 Citations (Scopus)

239 Downloads (Pure)
A review of recent machine learning advances for forecasting harmful algal blooms and shellfish contamination
Cruz, R. C., Costa, P. R., Vinga, S., Krippahl, L. & Lopes, M. B., 5 Mar 2021, In: Journal of Marine Science and Engineering. 9, 3, 283.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
62 Citations (Scopus)

67 Downloads (Pure)
Learning Biomedical Networks: Toward Data-Informed Clinical Decision and Therapy
Lopes, M. B. & Vinga, S., 2021, Advances in Artificial Intelligence, Computation, and Data Science. Pham, T. D., Yan, H., Ashraf, M. W. & Sjöberg, F. (eds.). Cham: Springer, p. 77–92 (Computational Biology; vol. 31).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
ML4 Microbiome, 22 Feb 2021, In: Frontiers in Microbiology. 12, 635781.
Research output: Contribution to journal › Article › peer-review

Open Access
File
52 Citations (Scopus)

33 Downloads (Pure)
The role of network science in glioblastoma
Lopes, M. B., Martins, E. P., Vinga, S. & Costa, B. M., 2 Mar 2021, In: Cancers. 13, 5, p. 1-22 22 p., 1045.
Research output: Contribution to journal › Review article › peer-review

Open Access
File
7 Citations (Scopus)

92 Downloads (Pure)
2020
Identification of Common Gene Signatures in Microarray and RNA-Sequencing Data Using Network-Based Regularization
Diegues, I., Vinga, S. & Lopes, M. B., 2020, Bioinformatics and Biomedical Engineering - 8th International Work-Conference, IWBBIO 2020, Proceedings. Rojas, I., Valenzuela, O., Rojas, F., Herrera, L. J. & Ortuño, F. (eds.). Cham: Springer, p. 15-26 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12108 LNBI).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Network-Based Variable Selection for Survival Outcomes in Oncological Data
Carrasquinha, E., Veríssimo, A., Lopes, M. B. & Vinga, S., 2020, Bioinformatics and Biomedical Engineering - 8th International Work-Conference, IWBBIO 2020, Proceedings. Rojas, I., Valenzuela, O., Rojas, F., Herrera, L. J. & Ortuño, F. (eds.). Cham: Springer, p. 550-561 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12108 LNBI).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
1 Citation (Scopus)
Tcox: Correlation-based regularization applied to colorectal cancer survival data
Peixoto, C., Lopes, M. B., Martins, M., Costa, L. & Vinga, S., Nov 2020, In: Biomedicines. 8, 11, p. 1-16 16 p., 488.
Research output: Contribution to journal › Article › peer-review

Open Access
File
3 Citations (Scopus)

18 Downloads (Pure)

Marta Isabel Belchior Lopes

Research output

Search results