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19992019
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Research Output at NOVA 1999 2019

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Article
Article
26 Citations (Scopus)

Adaptation of s. Cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication

Legras, J. L., Galeote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco-Duarte, R., Marcet-Houben, M., Gabaldon, T., Schuller, D., Sampaio, J. P. & Dequin, S., 1 Jan 2018, In : Molecular Biology And Evolution. 35, 7, p. 1712-1727 16 p.

Research output: Contribution to journalArticle

fermented foods
domestication
footprint
plasticity
genome
16 Citations (Scopus)
Open Access
wine yeasts
adaptive radiation
wild relatives
introgression
Wine
39 Citations (Scopus)
Open Access
95 Citations (Scopus)

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

Almeida, P., Gonçalves, C., Libkind, D., Bontrager, M., Masneuf-Pomarède, I., Albertin, W., Durrens, P., Sherman, D. J., Marullo, P., Todd Hittinger, C., Gonçalves, P. & Sampaio, J. P., 2 Jun 2014, In : Nature Communications. 5, 4044.

Research output: Contribution to journalArticle

wines
saccharomyces
Saccharomyces
fermentation
Wine
1329 Citations (Scopus)

A higher-level phylogenetic classification of the Fungi

Sampaio, J. P. N. D. S., 1 Jan 2007, In : Mycological Research. 111, NA, p. 509-547

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

A novel portable energy dispersive X-ray fluorescence spectrometer with triaxial geometry

Pessanha, S., Alves, M., Sampaio, J. M., Santos, J. P., Carvalho, ML. & Guerra, M., Jan 2017, In : Journal of Instrumentation. 12, P01014.

Research output: Contribution to journalArticle

Open Access
121 Citations (Scopus)

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences

Aime, M. C., Matheny, P. B., Henk, D. A., Frieders, E. M., Nilsson, R. H., Piepenbring, M., McLaughlin, D. J., Szabo, L. J., Begerow, D., Sampaio, J. P., Bauer, R., Weiss, M., Oberwinkler, F. & Hibbett, D. S., 1 Jan 2006, In : Mycologia. 98, 6, p. 896-905 10 p.

Research output: Contribution to journalArticle

Open Access
Pucciniomycotina
Basidiomycota
Ribosomal DNA
Fungi
fungus
71 Citations (Scopus)

A population genomics insight into the Mediterranean origins of wine yeast domestication

Almeida, P., Barbosa, R., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J. L., Serra, M., Dequin, S., Couloux, A., Guy, J., Bensasson, D., Gonçalves, P. & Sampaio, J. P., Nov 2015, In : Molecular Ecology. 24, 21, p. 5412-5427 16 p.

Research output: Contribution to journalArticle

wine yeasts
Metagenomics
domestication
Wine
yeast
23 Citations (Scopus)
Open Access
Estuaries
Denaturing Gradient Gel Electrophoresis
Portugal
Rivers
Yeasts
81 Citations (Scopus)
Open Access
Portugal
Microsatellite Repeats
Yeasts
Polymerase Chain Reaction
Sequence Analysis
1 Citation (Scopus)

Blastobotrys bombycis sp. Nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva bombyx mori

Barretto, D. A., Avchar, R., Carvalho, C., Sampaio, J. P., Vootla, S. K. & Baghela, A., 1 Aug 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 8, p. 2638-2643 6 p., 002890.

Research output: Contribution to journalArticle

Bombyx
Xylose
Bombyx mori
xylose
yeast
8 Citations (Scopus)
14 Downloads (Pure)

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, N., Moliné, M., David-Palma, M., Coelho, M. A., Hittinger, C. T., Sampaio, J. P., Gonçalves, P. & Libkind, D., 9 Nov 2016, In : BMC Genomics. 17, 1, p. 901

Research output: Contribution to journalArticle

Open Access
File
Sexuality
Genomics
Genome
Introns
Genes
11 Citations (Scopus)
Open Access
3 Citations (Scopus)

Cryptotrichosporon argae sp. nov., cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

Pontes, A., Röhl, O., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Sep 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 9, p. 3610-3614 5 p., 002177.

Research output: Contribution to journalArticle

Portugal
rRNA Genes
forest soils
forest soil
yeast
7 Citations (Scopus)

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from european cold environments and arctic region

Turchetti, B., Selbmann, L., Gunde-Cimerman, N., Buzzini, P., Sampaio, J. P. & Zalar, P., 1 Jun 2018, In : Life. 8, 2, 9.

Research output: Contribution to journalArticle

Open Access
Arctic Regions
Arctic regions
yeast
Yeast
Arctic region
4 Citations (Scopus)

Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov., isolated from Mediterranean forest soils

Pontes, A., Röhl, O., Carvalho, C., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 1058-1062 5 p., 000835.

Research output: Contribution to journalArticle

Cystofilobasidium
Mediterranean soil
Portugal
Hyphae
Mycelium
58 Citations (Scopus)

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., Hutzler, M., Gonçalves, P. & Sampaio, J. P., 24 Oct 2016, In : Current Biology. 26, 20, p. 2750-2761 12 p.

Research output: Contribution to journalArticle

Open Access
wine yeasts
Beer
Wine
domestication
beers
12 Citations (Scopus)
Open Access
41 Citations (Scopus)
Open Access
19 Citations (Scopus)
7 Downloads (Pure)

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

Barbosa, R., Almeida, P., Safar, S. V. B., Santos, R. O., Morais, P. B., Nielly-Thibault, L., Leducq, J. B., Landry, C. R., Gonçalves, P. M. T. M. B., Rosa, C. A. & Sampaio, J. P., Feb 2016, In : Genome Biology And Evolution. 8, 2, p. 317-329 13 p.

Research output: Contribution to journalArticle

Open Access
File
wild population
Saccharomyces cerevisiae
hybridization
Fagaceae
Population
10 Citations (Scopus)
29 Citations (Scopus)

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

Coelho, M. A., Gonçalves, C., Sampaio, J. P. & Gonçalves, P., Jun 2013, In : PLoS Genetics. 9, 6, e1003587.

Research output: Contribution to journalArticle

Horizontal Gene Transfer
gene transfer
Fructose
transporters
fructose
5 Citations (Scopus)

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

David-Palma, M., Sampaio, J. P. & Gonçalves, P., 1 Jun 2016, In : PLoS Genetics. 12, 6, e1006110.

Research output: Contribution to journalArticle

Pheromone Receptors
Basidiomycota
chemoreceptors
dissection
sexual reproduction
14 Citations (Scopus)

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe

David-Palma, M., Libkind, D. & Sampaio, J. P., Feb 2014, In : Molecular Ecology. 23, 4, p. 921-932 12 p.

Research output: Contribution to journalArticle

Nothofagus
astaxanthin
Australasia
Australasian region
Cyttaria
28 Citations (Scopus)

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Peris, D., Moriarty, R. V., Alexander, W. G., Baker, E. C., Sylvester, K., Sardi, M., Langdon, Q. K., Libkind, D., Wang, Q. M., Bai, F. Y., Leducq, J. B., Charron, G., Landry, C. R., Sampaio, J. P., Gonçalves, P., Hyma, K. E., Fay, J. C., Sato, T. K. & Hittinger, C. T., 27 Mar 2017, In : Biotechnology for Biofuels. 10, 1, 78.

Research output: Contribution to journalArticle

Open Access
Saccharomyces
Biofuels
biofuel
Yeast
Xylose
4 Citations (Scopus)

Jaminaea phylloscopi sp. Nov. (microstromatales), a basidiomycetous yeast isolated from migratory birds in the mediterranean basin

Francesca, N., Guerreiro, M. A., Carvalho, C., Coelho, M., Alfonzo, A., Randazzo, W., Sampaio, J. P. & Moschetti, G., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 824-829 6 p., 000801.

Research output: Contribution to journalArticle

Microstromatales
rRNA Genes
Birds
yeast
substitution
11 Citations (Scopus)
Open Access
36 Citations (Scopus)

Local climatic adaptation in a widespread microorganism

Leducq, J. B., Charron, G., Samani, P., Dubé, A. K., Sylvester, K., James, B., Almeida, P., Sampaio, J. P., Hittinger, C. T., Bell, G. & Landry, C. R., 22 Feb 2014, In : Proceedings Of The Royal Society B-Biological Sciences. 281, 1777, 20132472.

Research output: Contribution to journalArticle

Climate
Microorganisms
fitness
microorganism
climate change
20 Citations (Scopus)

Local climatic conditions constrain soil yeast diversity patterns in mediterranean forests, woodlands and scrub biome

Yurkov, A. M., Röhl, O., Pontes, A., Carvalho, C., Maldonado, C. & Sampaio, J. P., 20 Dec 2015, In : Fems Yeast Research. 16, 1, fov103.

Research output: Contribution to journalArticle

Ecosystem
Soil
Yeasts
Portugal
Microbiota
1 Citation (Scopus)

Microbe profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

Sampaio, J. P., 1 Sep 2018, In : Microbiology (United Kingdom). 164, 9, p. 1069-1071 3 p., 000677.

Research output: Contribution to journalArticle

Saccharomyces
Yeasts
South America
Fermentation
Saccharomyces cerevisiae
112 Citations (Scopus)
Open Access
2 Citations (Scopus)
aprepitant
Comb and Wattles
Ointments
Fermentation
yeast
8 Citations (Scopus)
3 Downloads (Pure)

Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts

Barbosa, R., Pontes, A., Santos, R. O., Montandon, G. G., De Ponzzes-Gomes, C. M., Morais, P. B., Gonçalves, P., Rosa, C. A. & Sampaio, J. P., 1 Aug 2018, In : Genome Biology And Evolution. 10, 8, p. 1939-1955 17 p.

Research output: Contribution to journalArticle

Open Access
File
artificial selection
domestication
yeast
Yeasts
Wine
4 Citations (Scopus)
Open Access
179 Citations (Scopus)
Open Access
Saccharomyces
Portugal
bark
Saccharomyces cerevisiae
Quercus
23 Citations (Scopus)
Open Access
2 Citations (Scopus)

Occultifur mephitis f.A., sp. Nov. and other yeast species from hypoxic and elevated CO2 mofette environments

Šibanc, N., Zalar, P., Schroers, H. J., Zajc, J., Pontes, A., Sampaio, J. P. & MaČEk, I., 1 Jul 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 7, p. 2285-2298 14 p., 002824.

Research output: Contribution to journalArticle

Mephitis
Mephitidae
yeast
Soil
Yeasts
80 Citations (Scopus)

Occurrence and diversity of yeasts in the Mid-Atlantic ridge hydrothermal fields near the Azores Archipelago

Gadanho, M. & Sampaio, J. P. N. D. S., Oct 2005, In : Microbial Ecology. 50, 3, p. 408-417 10 p.

Research output: Contribution to journalArticle

Open Access
Azores
archipelago
yeast
yeasts
minisatellite repeats