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19992019

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Research Output at NOVA

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Article
2019

Rare and undersampled dimorphic basidiomycetes

Aleksey V., K., Turchetti, B., Inácio, J., Carvalho, C., Mašínová, T., Pontes, A., Röhl, O., Anna M., G., Olexander Yu, A., Baldrian, P., Begerow, D., Buzzini, P., Sampaio, J. P. & Yurkov, A. M., 3 Jul 2019, In : Mycological Progress. 18, 7, p. 945-971 26 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
Open Access
File
1 Citation (Scopus)
2018

Adaptation of s. Cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication

Legras, J. L., Galeote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco-Duarte, R., Marcet-Houben, M., Gabaldon, T., Schuller, D., Sampaio, J. P. & Dequin, S., 1 Jan 2018, In : Molecular Biology And Evolution. 35, 7, p. 1712-1727 16 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Blastobotrys bombycis sp. Nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva bombyx mori

Barretto, D. A., Avchar, R., Carvalho, C., Sampaio, J. P., Vootla, S. K. & Baghela, A., 1 Aug 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 8, p. 2638-2643 6 p., 002890.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from european cold environments and arctic region

Turchetti, B., Selbmann, L., Gunde-Cimerman, N., Buzzini, P., Sampaio, J. P. & Zalar, P., 1 Jun 2018, In : Life. 8, 2, 9.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Microbe profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

Sampaio, J. P., 1 Sep 2018, In : Microbiology (United Kingdom). 164, 9, p. 1069-1071 3 p., 000677.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2 Citations (Scopus)

Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts

Barbosa, R., Pontes, A., Santos, R. O., Montandon, G. G., De Ponzzes-Gomes, C. M., Morais, P. B., Gonçalves, P., Rosa, C. A. & Sampaio, J. P., 1 Aug 2018, In : Genome Biology And Evolution. 10, 8, p. 1939-1955 17 p.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
6 Downloads (Pure)

Occultifur mephitis f.A., sp. Nov. and other yeast species from hypoxic and elevated CO2 mofette environments

Šibanc, N., Zalar, P., Schroers, H. J., Zajc, J., Pontes, A., Sampaio, J. P. & MaČEk, I., 1 Jul 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 7, p. 2285-2298 14 p., 002824.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Papiliotrema plantarum sp. Nov., a novel tremellaceous sexual yeast species

Into, P., Pontes, A., Jacques, N., Casaregola, S., Limtong, S. & Sampaio, J. P., 1 Jun 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 6, p. 1937-1941 5 p., 002771.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK)

Nilsson, R. H., Taylor, A. F. S., Adams, R. I., Baschien, C., Bengtsson-Palme, J., Cangren, P., Coleine, C., Daniel, H. M., Glassman, S. I., Hirooka, Y., Irinyi, L., Iršenaite, R., Martin-Sanchez, P. M., Meyer, W., Oh, S. Y., Sampaio, J. P., Seifert, K. A., Sklenář, F., Stubbe, D., Suh, S. O. & 12 others, Summerbell, R., Svantesson, S., Unterseher, M., Visagie, C. M., Weiss, M., Woudenberg, J. H. C., Wurzbacher, C., Van Den Wyngaert, S., Yilmaz, N., Yurkov, A., Kõljalg, U. & Abarenkov, K., 8 Jan 2018, In : MYCOKEYS. 28, p. 65-82 18 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
1 Downloads (Pure)
1 Citation (Scopus)
2017
Open Access
20 Citations (Scopus)

A novel portable energy dispersive X-ray fluorescence spectrometer with triaxial geometry

Pessanha, S., Alves, M., Sampaio, J. M., Santos, J. P., Carvalho, ML. & Guerra, M., Jan 2017, In : Journal of Instrumentation. 12, P01014.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)

Cryptotrichosporon argae sp. nov., cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

Pontes, A., Röhl, O., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Sep 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 9, p. 3610-3614 5 p., 002177.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Peris, D., Moriarty, R. V., Alexander, W. G., Baker, E. C., Sylvester, K., Sardi, M., Langdon, Q. K., Libkind, D., Wang, Q. M., Bai, F. Y., Leducq, J. B., Charron, G., Landry, C. R., Sampaio, J. P., Gonçalves, P., Hyma, K. E., Fay, J. C., Sato, T. K. & Hittinger, C. T., 27 Mar 2017, In : Biotechnology for Biofuels. 10, 1, 78.

Research output: Contribution to journalArticle

Open Access
34 Citations (Scopus)
2016

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, N., Moliné, M., David-Palma, M., Coelho, M. A., Hittinger, C. T., Sampaio, J. P., Gonçalves, P. & Libkind, D., 9 Nov 2016, In : BMC Genomics. 17, 1, p. 901

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
18 Downloads (Pure)

Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov., isolated from Mediterranean forest soils

Pontes, A., Röhl, O., Carvalho, C., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 1058-1062 5 p., 000835.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., Hutzler, M., Gonçalves, P. & Sampaio, J. P., 24 Oct 2016, In : Current Biology. 26, 20, p. 2750-2761 12 p.

Research output: Contribution to journalArticle

Open Access
73 Citations (Scopus)

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

Barbosa, R., Almeida, P., Safar, S. V. B., Santos, R. O., Morais, P. B., Nielly-Thibault, L., Leducq, J. B., Landry, C. R., Gonçalves, P. M. T. M. B., Rosa, C. A. & Sampaio, J. P., Feb 2016, In : Genome Biology And Evolution. 8, 2, p. 317-329 13 p.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
7 Downloads (Pure)

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

David-Palma, M., Sampaio, J. P. & Gonçalves, P., 1 Jun 2016, In : PLoS Genetics. 12, 6, e1006110.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Jaminaea phylloscopi sp. Nov. (microstromatales), a basidiomycetous yeast isolated from migratory birds in the mediterranean basin

Francesca, N., Guerreiro, M. A., Carvalho, C., Coelho, M., Alfonzo, A., Randazzo, W., Sampaio, J. P. & Moschetti, G., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 824-829 6 p., 000801.

Research output: Contribution to journalArticle

4 Citations (Scopus)
7 Citations (Scopus)
2015

A population genomics insight into the Mediterranean origins of wine yeast domestication

Almeida, P., Barbosa, R., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J. L., Serra, M., Dequin, S., Couloux, A., Guy, J., Bensasson, D., Gonçalves, P. & Sampaio, J. P., Nov 2015, In : Molecular Ecology. 24, 21, p. 5412-5427 16 p.

Research output: Contribution to journalArticle

79 Citations (Scopus)
11 Citations (Scopus)

Local climatic conditions constrain soil yeast diversity patterns in mediterranean forests, woodlands and scrub biome

Yurkov, A. M., Röhl, O., Pontes, A., Carvalho, C., Maldonado, C. & Sampaio, J. P., 20 Dec 2015, In : Fems Yeast Research. 16, 1, fov103.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Sex in the cold: Taxonomic reorganization of psychrotolerant yeasts in the order Leucosporidiales

de García, V., Coelho, M. A. D., Maia, T. M., Rosa, L. H., Vaz, A. M., Rosa, C. A., Sampaio, J. P., Gonçalves, P., van Broock, M. & Libkind, D., 2015, In : Fems Yeast Research. 15, 4, fov019.

Research output: Contribution to journalArticle

16 Citations (Scopus)
34 Citations (Scopus)
2014

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

Almeida, P., Gonçalves, C., Libkind, D., Bontrager, M., Masneuf-Pomarède, I., Albertin, W., Durrens, P., Sherman, D. J., Marullo, P., Todd Hittinger, C., Gonçalves, P. & Sampaio, J. P., 2 Jun 2014, In : Nature Communications. 5, 4044.

Research output: Contribution to journalArticle

106 Citations (Scopus)

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe

David-Palma, M., Libkind, D. & Sampaio, J. P., Feb 2014, In : Molecular Ecology. 23, 4, p. 921-932 12 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Local climatic adaptation in a widespread microorganism

Leducq, J. B., Charron, G., Samani, P., Dubé, A. K., Sylvester, K., James, B., Almeida, P., Sampaio, J. P., Hittinger, C. T., Bell, G. & Landry, C. R., 22 Feb 2014, In : Proceedings Of The Royal Society B-Biological Sciences. 281, 1777, 20132472.

Research output: Contribution to journalArticle

39 Citations (Scopus)

Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids

Peris, D., Sylvester, K., Libkind, D., Gonçalves, P., Sampaio, J. P., Alexander, W. G. & Hittinger, C. T., Apr 2014, In : Molecular Ecology. 23, 8, p. 2031-2045 15 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)

Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to the cactus ecoclade

Francesca, N., Carvalho, C., Sannino, C., Guerreiro, M. A., Almeida, P. M., Settanni, L., Massa, B., Sampaio, J. P. & Moschetti, G., Sep 2014, In : Fems Yeast Research. 14, 6, p. 910-921 12 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2013

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

Coelho, M. A., Gonçalves, C., Sampaio, J. P. & Gonçalves, P., Jun 2013, In : PLoS Genetics. 9, 6, e1003587.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Wickerhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds

Francesca, N., Carvalho, C., Almeida, P., Sannino, C., Settanni, L., Sampaio, J. P. & Moschetti, G., Dec 2013, In : International Journal of Systematic and Evolutionary Microbiology. 63, PART 12, p. 4824-4830 7 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota)

Sampaio, J. P. N. D. S., 1 Jan 2011, In : Yeast. 28, 8, p. 619-627

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)
2010
Open Access
40 Citations (Scopus)

Remarkably ancient balanced polymorphisms in a multi-locus gene network

Gonçalves, P. M. T. M. B. & Sampaio, J. P. N. D. S., 1 Jan 2010, In : Nature. 464, 7285, p. 54-U61

Research output: Contribution to journalArticle

Open Access
100 Citations (Scopus)
14 Citations (Scopus)

Yeasts from high-altitude lakes: influence of UV radiation

Sampaio, J. P. N. D. S., 1 Jan 2009, In : FEMS microbiology ecology. 69, NA, p. 353-362

Research output: Contribution to journalArticle

Open Access
43 Citations (Scopus)
2008
Open Access
194 Citations (Scopus)