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19992019
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Research Output at NOVA 1999 2019

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Article
2019
2 Citations (Scopus)

Rare and undersampled dimorphic basidiomycetes

Aleksey V., K., Turchetti, B., Inácio, J., Mašínová, T., Röhl, O., Anna M., G., Olexander Yu, A., Baldrian, P., Begerow, D., Buzzini, P., Sampaio, J. P., Yurkov, A. M., Pontes, A. & Carvalho, C., 3 Jul 2019, In : Mycological Progress. Vol. 18, n.º 7, p. 945-971 26 p.

Research output: Contribution to journalArticle

Basidiomycota
yeast
Yeasts
new species
Comb and Wattles
2018
22 Citations (Scopus)

Adaptation of s. Cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication

Legras, J. L., Galeote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco-Duarte, R., Marcet-Houben, M., Gabaldon, T., Schuller, D., Sampaio, J. P. & Dequin, S., 1 Jan 2018, In : Molecular Biology And Evolution. 35, 7, p. 1712-1727 16 p.

Research output: Contribution to journalArticle

fermented foods
domestication
footprint
plasticity
genome

Blastobotrys bombycis sp. Nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva bombyx mori

Barretto, D. A., Avchar, R., Carvalho, C., Sampaio, J. P., Vootla, S. K. & Baghela, A., 1 Aug 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 8, p. 2638-2643 6 p., 002890.

Research output: Contribution to journalArticle

Bombyx
Xylose
Bombyx mori
xylose
yeast
6 Citations (Scopus)

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from european cold environments and arctic region

Turchetti, B., Selbmann, L., Gunde-Cimerman, N., Buzzini, P., Sampaio, J. P. & Zalar, P., 1 Jun 2018, In : Life. 8, 2, 9.

Research output: Contribution to journalArticle

Open Access
Arctic Regions
Arctic regions
yeast
Yeast
Arctic region
1 Citation (Scopus)

Microbe profile: Saccharomyces eubayanus, the missing link to lager beer yeasts

Sampaio, J. P., 1 Sep 2018, In : Microbiology (United Kingdom). 164, 9, p. 1069-1071 3 p., 000677.

Research output: Contribution to journalArticle

Saccharomyces
Yeasts
South America
Fermentation
Saccharomyces cerevisiae
2 Citations (Scopus)
aprepitant
Comb and Wattles
Ointments
Fermentation
yeast
7 Citations (Scopus)
3 Downloads (Pure)

Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication- The Case of Cachaça Yeasts

Barbosa, R., Pontes, A., Santos, R. O., Montandon, G. G., De Ponzzes-Gomes, C. M., Morais, P. B., Gonçalves, P., Rosa, C. A. & Sampaio, J. P., 1 Aug 2018, In : Genome Biology And Evolution. 10, 8, p. 1939-1955 17 p.

Research output: Contribution to journalArticle

Open Access
File
artificial selection
domestication
yeast
Yeasts
Wine
2 Citations (Scopus)

Occultifur mephitis f.A., sp. Nov. and other yeast species from hypoxic and elevated CO2 mofette environments

Šibanc, N., Zalar, P., Schroers, H. J., Zajc, J., Pontes, A., Sampaio, J. P. & MaČEk, I., 1 Jul 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 7, p. 2285-2298 14 p., 002824.

Research output: Contribution to journalArticle

Mephitis
Mephitidae
yeast
Soil
Yeasts
2 Citations (Scopus)

Papiliotrema plantarum sp. Nov., a novel tremellaceous sexual yeast species

Into, P., Pontes, A., Jacques, N., Casaregola, S., Limtong, S. & Sampaio, J. P., 1 Jun 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 6, p. 1937-1941 5 p., 002771.

Research output: Contribution to journalArticle

basidia
yeast
Yeasts
French Guiana
yeasts
6 Citations (Scopus)

Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK)

Nilsson, R. H., Taylor, A. F. S., Adams, R. I., Baschien, C., Bengtsson-Palme, J., Cangren, P., Coleine, C., Daniel, H. M., Glassman, S. I., Hirooka, Y., Irinyi, L., Iršenaite, R., Martin-Sanchez, P. M., Meyer, W., Oh, S. Y., Sampaio, J. P., Seifert, K. A., Sklenář, F., Stubbe, D., Suh, S. O. & 12 others, Summerbell, R., Svantesson, S., Unterseher, M., Visagie, C. M., Weiss, M., Woudenberg, J. H. C., Wurzbacher, C., Van Den Wyngaert, S., Yilmaz, N., Yurkov, A., Kõljalg, U. & Abarenkov, K., 8 Jan 2018, In : MYCOKEYS. 28, p. 65-82 18 p.

Research output: Contribution to journalArticle

Open Access
File
metadata
fungus
fungi
Talaromyces
Acremonium
Plant Bark
Arabinose
Xylose
Lakes
New Zealand
2017
15 Citations (Scopus)
Open Access
wine yeasts
adaptive radiation
wild relatives
introgression
Wine
10 Citations (Scopus)

A novel portable energy dispersive X-ray fluorescence spectrometer with triaxial geometry

Pessanha, S., Alves, M., Sampaio, J. M., Santos, J. P., Carvalho, ML. & Guerra, M., Jan 2017, In : Journal of Instrumentation. 12, P01014.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Cryptotrichosporon argae sp. nov., cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

Pontes, A., Röhl, O., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Sep 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 9, p. 3610-3614 5 p., 002177.

Research output: Contribution to journalArticle

Portugal
rRNA Genes
forest soils
forest soil
yeast
26 Citations (Scopus)

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Peris, D., Moriarty, R. V., Alexander, W. G., Baker, E. C., Sylvester, K., Sardi, M., Langdon, Q. K., Libkind, D., Wang, Q. M., Bai, F. Y., Leducq, J. B., Charron, G., Landry, C. R., Sampaio, J. P., Gonçalves, P., Hyma, K. E., Fay, J. C., Sato, T. K. & Hittinger, C. T., 27 Mar 2017, In : Biotechnology for Biofuels. 10, 1, 78.

Research output: Contribution to journalArticle

Open Access
Saccharomyces
Biofuels
biofuel
Yeast
Xylose
2016
8 Citations (Scopus)
8 Downloads (Pure)

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, N., Moliné, M., David-Palma, M., Coelho, M. A., Hittinger, C. T., Sampaio, J. P., Gonçalves, P. & Libkind, D., 9 Nov 2016, In : BMC Genomics. 17, 1, p. 901

Research output: Contribution to journalArticle

Open Access
File
Sexuality
Genomics
Genome
Introns
Genes
4 Citations (Scopus)

Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov., isolated from Mediterranean forest soils

Pontes, A., Röhl, O., Carvalho, C., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 1058-1062 5 p., 000835.

Research output: Contribution to journalArticle

Cystofilobasidium
Mediterranean soil
Portugal
Hyphae
Mycelium
56 Citations (Scopus)

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., Hutzler, M., Gonçalves, P. & Sampaio, J. P., 24 Oct 2016, In : Current Biology. 26, 20, p. 2750-2761 12 p.

Research output: Contribution to journalArticle

Open Access
wine yeasts
Beer
Wine
domestication
beers
19 Citations (Scopus)
7 Downloads (Pure)

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

Barbosa, R., Almeida, P., Safar, S. V. B., Santos, R. O., Morais, P. B., Nielly-Thibault, L., Leducq, J. B., Landry, C. R., Gonçalves, P. M. T. M. B., Rosa, C. A. & Sampaio, J. P., Feb 2016, In : Genome Biology And Evolution. 8, 2, p. 317-329 13 p.

Research output: Contribution to journalArticle

Open Access
File
wild population
Saccharomyces cerevisiae
hybridization
Fagaceae
Population
5 Citations (Scopus)

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

David-Palma, M., Sampaio, J. P. & Gonçalves, P., 1 Jun 2016, In : PLoS Genetics. 12, 6, e1006110.

Research output: Contribution to journalArticle

Pheromone Receptors
Basidiomycota
chemoreceptors
dissection
sexual reproduction
4 Citations (Scopus)

Jaminaea phylloscopi sp. Nov. (microstromatales), a basidiomycetous yeast isolated from migratory birds in the mediterranean basin

Francesca, N., Guerreiro, M. A., Carvalho, C., Coelho, M., Alfonzo, A., Randazzo, W., Sampaio, J. P. & Moschetti, G., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 824-829 6 p., 000801.

Research output: Contribution to journalArticle

Microstromatales
rRNA Genes
Birds
yeast
substitution
3 Citations (Scopus)
Hydrothermal Vents
coastal water
yeast
Yeasts
yeasts
2015
69 Citations (Scopus)

A population genomics insight into the Mediterranean origins of wine yeast domestication

Almeida, P., Barbosa, R., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J. L., Serra, M., Dequin, S., Couloux, A., Guy, J., Bensasson, D., Gonçalves, P. & Sampaio, J. P., Nov 2015, In : Molecular Ecology. 24, 21, p. 5412-5427 16 p.

Research output: Contribution to journalArticle

wine yeasts
Metagenomics
domestication
Wine
yeast
10 Citations (Scopus)
20 Citations (Scopus)

Local climatic conditions constrain soil yeast diversity patterns in mediterranean forests, woodlands and scrub biome

Yurkov, A. M., Röhl, O., Pontes, A., Carvalho, C., Maldonado, C. & Sampaio, J. P., 20 Dec 2015, In : Fems Yeast Research. 16, 1, fov103.

Research output: Contribution to journalArticle

Ecosystem
Soil
Yeasts
Portugal
Microbiota
15 Citations (Scopus)

Sex in the cold: Taxonomic reorganization of psychrotolerant yeasts in the order Leucosporidiales

de García, V., Coelho, M. A. D., Maia, T. M., Rosa, L. H., Vaz, A. M., Rosa, C. A., Sampaio, J. P., Gonçalves, P., van Broock, M. & Libkind, D., 2015, In : Fems Yeast Research. 15, 4, fov019.

Research output: Contribution to journalArticle

Yeasts
Comb and Wattles
Nucleotides
28 Citations (Scopus)
Endangered Species
Brazil
Yeasts
Water
Cryptococcus
2014
92 Citations (Scopus)

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

Almeida, P., Gonçalves, C., Libkind, D., Bontrager, M., Masneuf-Pomarède, I., Albertin, W., Durrens, P., Sherman, D. J., Marullo, P., Todd Hittinger, C., Gonçalves, P. & Sampaio, J. P., 2 Jun 2014, In : Nature Communications. 5, 4044.

Research output: Contribution to journalArticle

wines
saccharomyces
Saccharomyces
fermentation
Wine
14 Citations (Scopus)

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe

David-Palma, M., Libkind, D. & Sampaio, J. P., Feb 2014, In : Molecular Ecology. 23, 4, p. 921-932 12 p.

Research output: Contribution to journalArticle

Nothofagus
astaxanthin
Australasia
Australasian region
Cyttaria
36 Citations (Scopus)

Local climatic adaptation in a widespread microorganism

Leducq, J. B., Charron, G., Samani, P., Dubé, A. K., Sylvester, K., James, B., Almeida, P., Sampaio, J. P., Hittinger, C. T., Bell, G. & Landry, C. R., 22 Feb 2014, In : Proceedings Of The Royal Society B-Biological Sciences. 281, 1777, 20132472.

Research output: Contribution to journalArticle

Climate
Microorganisms
fitness
microorganism
climate change
66 Citations (Scopus)

Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids

Peris, D., Sylvester, K., Libkind, D., Gonçalves, P., Sampaio, J. P., Alexander, W. G. & Hittinger, C. T., Apr 2014, In : Molecular Ecology. 23, 8, p. 2031-2045 15 p.

Research output: Contribution to journalArticle

Saccharomyces
brewing
population structure
Argentina
Population
11 Citations (Scopus)

Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to the cactus ecoclade

Francesca, N., Carvalho, C., Sannino, C., Guerreiro, M. A., Almeida, P. M., Settanni, L., Massa, B., Sampaio, J. P. & Moschetti, G., Sep 2014, In : Fems Yeast Research. 14, 6, p. 910-921 12 p.

Research output: Contribution to journalArticle

Mediterranean Islands
Cactaceae
Cloaca
Birds
Yeasts
2013
29 Citations (Scopus)

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

Coelho, M. A., Gonçalves, C., Sampaio, J. P. & Gonçalves, P., Jun 2013, In : PLoS Genetics. 9, 6, e1003587.

Research output: Contribution to journalArticle

Horizontal Gene Transfer
gene transfer
Fructose
transporters
fructose
10 Citations (Scopus)

Wickerhamomyces sylviae f.a., sp. nov., an ascomycetous yeast species isolated from migratory birds

Francesca, N., Carvalho, C., Almeida, P., Sannino, C., Settanni, L., Sampaio, J. P. & Moschetti, G., Dec 2013, In : International Journal of Systematic and Evolutionary Microbiology. 63, PART 12, p. 4824-4830 7 p.

Research output: Contribution to journalArticle

Wickerhamomyces
Birds
yeast
Yeasts
yeasts
40 Citations (Scopus)
Open Access
10 Citations (Scopus)

Phylogenetic distribution of fungal mycosporines within the Pucciniomycotina (Basidiomycota)

Sampaio, J. P. N. D. S., 1 Jan 2011, In : Yeast. 28, 8, p. 619-627

Research output: Contribution to journalArticle

Open Access
2010
39 Citations (Scopus)
Open Access
98 Citations (Scopus)

Remarkably ancient balanced polymorphisms in a multi-locus gene network

Gonçalves, P. M. T. M. B. & Sampaio, J. P. N. D. S., 1 Jan 2010, In : Nature. 464, 7285, p. 54-U61

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
Estuaries
Rivers
Yeasts
Ecosystem
Population
39 Citations (Scopus)

Yeasts from high-altitude lakes: influence of UV radiation

Sampaio, J. P. N. D. S., 1 Jan 2009, In : FEMS microbiology ecology. 69, NA, p. 353-362

Research output: Contribution to journalArticle

Open Access
2008
179 Citations (Scopus)
Open Access
Saccharomyces
Portugal
bark
Saccharomyces cerevisiae
Quercus
2007
1325 Citations (Scopus)

A higher-level phylogenetic classification of the Fungi

Sampaio, J. P. N. D. S., 1 Jan 2007, In : Mycological Research. 111, NA, p. 509-547

Research output: Contribution to journalArticle

Open Access