• 4381 Citations
  • 29 h-Index
19992019
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Research Output at NOVA 1999 2019

26 Citations (Scopus)

Adaptation of s. Cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication

Legras, J. L., Galeote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco-Duarte, R., Marcet-Houben, M., Gabaldon, T., Schuller, D., Sampaio, J. P. & Dequin, S., 1 Jan 2018, In : Molecular Biology And Evolution. 35, 7, p. 1712-1727 16 p.

Research output: Contribution to journalArticle

fermented foods
domestication
footprint
plasticity
genome
16 Citations (Scopus)
Open Access
wine yeasts
adaptive radiation
wild relatives
introgression
Wine
39 Citations (Scopus)
Open Access
95 Citations (Scopus)

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

Almeida, P., Gonçalves, C., Libkind, D., Bontrager, M., Masneuf-Pomarède, I., Albertin, W., Durrens, P., Sherman, D. J., Marullo, P., Todd Hittinger, C., Gonçalves, P. & Sampaio, J. P., 2 Jun 2014, In : Nature Communications. 5, 4044.

Research output: Contribution to journalArticle

wines
saccharomyces
Saccharomyces
fermentation
Wine
1328 Citations (Scopus)

A higher-level phylogenetic classification of the Fungi

Sampaio, J. P. N. D. S., 1 Jan 2007, In : Mycological Research. 111, NA, p. 509-547

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

A novel portable energy dispersive X-ray fluorescence spectrometer with triaxial geometry

Pessanha, S., Alves, M., Sampaio, J. M., Santos, J. P., Carvalho, ML. & Guerra, M., Jan 2017, In : Journal of Instrumentation. 12, P01014.

Research output: Contribution to journalArticle

Open Access
121 Citations (Scopus)

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences

Aime, M. C., Matheny, P. B., Henk, D. A., Frieders, E. M., Nilsson, R. H., Piepenbring, M., McLaughlin, D. J., Szabo, L. J., Begerow, D., Sampaio, J. P., Bauer, R., Weiss, M., Oberwinkler, F. & Hibbett, D. S., 1 Jan 2006, In : Mycologia. 98, 6, p. 896-905 10 p.

Research output: Contribution to journalArticle

Open Access
Pucciniomycotina
Basidiomycota
Ribosomal DNA
Fungi
fungus
71 Citations (Scopus)

A population genomics insight into the Mediterranean origins of wine yeast domestication

Almeida, P., Barbosa, R., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J. L., Serra, M., Dequin, S., Couloux, A., Guy, J., Bensasson, D., Gonçalves, P. & Sampaio, J. P., Nov 2015, In : Molecular Ecology. 24, 21, p. 5412-5427 16 p.

Research output: Contribution to journalArticle

wine yeasts
Metagenomics
domestication
Wine
yeast
23 Citations (Scopus)
Open Access
Estuaries
Denaturing Gradient Gel Electrophoresis
Portugal
Rivers
Yeasts
81 Citations (Scopus)
Open Access
Portugal
Microsatellite Repeats
Yeasts
Polymerase Chain Reaction
Sequence Analysis
1 Citation (Scopus)

Auriculibuller Sampaio & Fonseca (2004)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1379-1381 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fungal Fruiting Bodies
Asexual Reproduction
Biochemistry
Hyphae
Physiology
3 Citations (Scopus)

Biogeography and ecology of the genus Saccharomyces

Sampaio, J. P. & Gonçalves, P., 1 Jan 2017, Yeasts in Natural Ecosystems: Ecology. Springer International Publishing, p. 131-153 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Breweries
Beer
Saccharomyces
Wine
Ecology
1 Citation (Scopus)

Blastobotrys bombycis sp. Nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva bombyx mori

Barretto, D. A., Avchar, R., Carvalho, C., Sampaio, J. P., Vootla, S. K. & Baghela, A., 1 Aug 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 8, p. 2638-2643 6 p., 002890.

Research output: Contribution to journalArticle

Bombyx
Xylose
Bombyx mori
xylose
yeast

Bulleribasidium Sampaio, Weiss & Bauer (2002)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1387-1389 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Fungal Fruiting Bodies
Yeasts
Asexual Reproduction
Biochemistry
3 Citations (Scopus)

Colacogloea Oberwinkler & Bandoni (1990)

Sampaio, J. P., Kirschner, R. & Oberwinkler, F., 2011, The Yeasts. Elsevier, Vol. 3. p. 1403-1408 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Hyphae
Electrons
Polyporales
Fungal Fruiting Bodies
8 Citations (Scopus)
10 Downloads (Pure)

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, N., Moliné, M., David-Palma, M., Coelho, M. A., Hittinger, C. T., Sampaio, J. P., Gonçalves, P. & Libkind, D., 9 Nov 2016, In : BMC Genomics. 17, 1, p. 901

Research output: Contribution to journalArticle

Open Access
File
Sexuality
Genomics
Genome
Introns
Genes
11 Citations (Scopus)
Open Access
3 Citations (Scopus)

Cryptotrichosporon argae sp. nov., cryptotrichosporon brontae sp. nov. and Cryptotrichosporon steropae sp. nov., isolated from forest soils

Pontes, A., Röhl, O., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Sep 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 9, p. 3610-3614 5 p., 002177.

Research output: Contribution to journalArticle

Portugal
rRNA Genes
forest soils
forest soil
yeast

Cuniculitrema Sampaio & R: Kirschner (2001)

Sampaio, J. P. & Kirschner, R., 2011, The Yeasts. Elsevier, Vol. 3. p. 1409-1411 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Fungal Spores
Physiology
Clamping devices
Yeast
4 Citations (Scopus)

Curvibasidium Sampaio & Golubev (2004)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1413-1418 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Asexual Reproduction
Rhodotorula
Biochemistry
Hyphae
Physiology
2 Citations (Scopus)

CyrenellaGochenaur (1981)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1743-1745 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fungal Spores
Agar
Asexual Reproduction
Mitosporic Fungi
Biochemistry
14 Citations (Scopus)

Cystobasidium (Lagerheim) Neuhoff (1924)

Sampaio, J. P. & Oberwinkler, F., 2011, The Yeasts. Elsevier, Vol. 3. p. 1419-1422 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hyphae
Yeast
Yeasts
Asexual Reproduction
Ascomycota
7 Citations (Scopus)

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from european cold environments and arctic region

Turchetti, B., Selbmann, L., Gunde-Cimerman, N., Buzzini, P., Sampaio, J. P. & Zalar, P., 1 Jun 2018, In : Life. 8, 2, 9.

Research output: Contribution to journalArticle

Open Access
Arctic Regions
Arctic regions
yeast
Yeast
Arctic region
4 Citations (Scopus)

Cystofilobasidium intermedium sp. nov. and Cystofilobasidium alribaticum f.a. sp. nov., isolated from Mediterranean forest soils

Pontes, A., Röhl, O., Carvalho, C., Maldonado, C., Yurkov, A. M. & Sampaio, J. P., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 1058-1062 5 p., 000835.

Research output: Contribution to journalArticle

Cystofilobasidium
Mediterranean soil
Portugal
Hyphae
Mycelium
6 Citations (Scopus)

Cystofilobasidium Oberwinkler & Bandoni (1983)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1423-1432 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Asexual Reproduction
Biochemistry
Physiology
Clamping devices
Carotenoids
57 Citations (Scopus)

Discussion of teleomorphic and anamorphic basidiomycetous yeasts

Fonseca, Á. L. A. M. R. D. & Sampaio, J. P. N. D. S., 1 Jan 2011, The Yeasts, a taxonomic study. Kurtzman, C. P., Fell, J. W. & Boekhout, T. (eds.). Amsterdam: Elsevier, p. 1339-1372

Research output: Chapter in Book/Report/Conference proceedingChapter

58 Citations (Scopus)

Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts

Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., Hutzler, M., Gonçalves, P. & Sampaio, J. P., 24 Oct 2016, In : Current Biology. 26, 20, p. 2750-2761 12 p.

Research output: Contribution to journalArticle

Open Access
wine yeasts
Beer
Wine
domestication
beers
12 Citations (Scopus)
Open Access
41 Citations (Scopus)
Open Access
19 Citations (Scopus)
7 Downloads (Pure)

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

Barbosa, R., Almeida, P., Safar, S. V. B., Santos, R. O., Morais, P. B., Nielly-Thibault, L., Leducq, J. B., Landry, C. R., Gonçalves, P. M. T. M. B., Rosa, C. A. & Sampaio, J. P., Feb 2016, In : Genome Biology And Evolution. 8, 2, p. 317-329 13 p.

Research output: Contribution to journalArticle

Open Access
File
wild population
Saccharomyces cerevisiae
hybridization
Fagaceae
Population
10 Citations (Scopus)
29 Citations (Scopus)

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

Coelho, M. A., Gonçalves, C., Sampaio, J. P. & Gonçalves, P., Jun 2013, In : PLoS Genetics. 9, 6, e1003587.

Research output: Contribution to journalArticle

Horizontal Gene Transfer
gene transfer
Fructose
transporters
fructose
5 Citations (Scopus)

Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete

David-Palma, M., Sampaio, J. P. & Gonçalves, P., 1 Jun 2016, In : PLoS Genetics. 12, 6, e1006110.

Research output: Contribution to journalArticle

Pheromone Receptors
Basidiomycota
chemoreceptors
dissection
sexual reproduction
51 Citations (Scopus)

Genomics and the making of yeast biodiversity

Hittinger, C. T., Rokas, A., Bai, F. Y., Boekhout, T., Gonçalves, P., Jeffries, T. W., Kominek, J., Lachance, M. A., Libkind, D., Rosa, C. A., Sampaio, J. P. & Kurtzman, C. P., 1 Dec 2015, In : Current Opinion in Genetics and Development. 35, p. 100-109 10 p.

Research output: Contribution to journalReview article

Biodiversity
Genomics
Yeasts
Genome
Chordata
14 Citations (Scopus)

Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe

David-Palma, M., Libkind, D. & Sampaio, J. P., Feb 2014, In : Molecular Ecology. 23, 4, p. 921-932 12 p.

Research output: Contribution to journalArticle

Nothofagus
astaxanthin
Australasia
Australasian region
Cyttaria
28 Citations (Scopus)

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Peris, D., Moriarty, R. V., Alexander, W. G., Baker, E. C., Sylvester, K., Sardi, M., Langdon, Q. K., Libkind, D., Wang, Q. M., Bai, F. Y., Leducq, J. B., Charron, G., Landry, C. R., Sampaio, J. P., Gonçalves, P., Hyma, K. E., Fay, J. C., Sato, T. K. & Hittinger, C. T., 27 Mar 2017, In : Biotechnology for Biofuels. 10, 1, 78.

Research output: Contribution to journalArticle

Open Access
Saccharomyces
Biofuels
biofuel
Yeast
Xylose
4 Citations (Scopus)

Jaminaea phylloscopi sp. Nov. (microstromatales), a basidiomycetous yeast isolated from migratory birds in the mediterranean basin

Francesca, N., Guerreiro, M. A., Carvalho, C., Coelho, M., Alfonzo, A., Randazzo, W., Sampaio, J. P. & Moschetti, G., 1 Feb 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 2, p. 824-829 6 p., 000801.

Research output: Contribution to journalArticle

Microstromatales
rRNA Genes
Birds
yeast
substitution

Kondoa Y. Yamada, Nakagawa & Banno emend. Fonseca, Sampaio & Fell

Fonseca, Á. L. A. M. R. D. & Sampaio, J. P. N. D. S., 1 Jan 2011, The Yeasts, a taxonomic study. Kurtzman, C. P., Fell, J. W. & Boekhout, T. (eds.). Amsterdam: Elsevier, p. 1471-1475

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

KriegeriaBresadola (1891)

Sampaio, J. P. & Oberwinkler, F., 2011, The Yeasts. Elsevier, Vol. 3. p. 1477-1479 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Agar
Biochemistry
Physiology
Ecology
Biotechnology
11 Citations (Scopus)
Open Access
2 Citations (Scopus)

Kurtzmanomyces Y: Yamada, M. Itoh, Kawasaki, Banno & Nakase (1988)

Sampaio, J. P., 2011, The Yeasts. Elsevier, Vol. 3. p. 1795-1800 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Agar
Reproduction
Fungal Fruiting Bodies
Asexual Reproduction
Biochemistry