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20052020

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Article
2020

Molecular epidemiology of HIV-1 infected migrants followed up in portugal: trends between 2001–2017

Pimentel, V., Pingarilho, M., Alves, D., Diogo, I., Fernandes, S., Miranda, M., Pineda-Peña, AC., Libin, P., Martins, MR., Vandamme, AM., Camacho, R. J., Gomes, P. & Abecasis, AB., Feb 2020, In : VIRUSES-BASEL. Vol. 12, n.º 3, p. 268-283 15 p., 268.

Research output: Contribution to journalArticle

Open Access
2019

A computational method for the identification of dengue, zika and chikungunya virus species and genotypes

Vagner S., F., Pieter J.K., L., Theys, K., Faria, N. R., Márcio Roberto Texeira, N., Maria I., R., Murilo, F., Marta, G., Cuypers, L., Nowé, A., Abecasis, AB., Deforche, K., Gilberto A., S., Isadora Cristina, D. S., Kaliane C.B., M., Emmanuel J., S., Kaliane C.B., M., Vasco Ariston De Carvalho, A., Ana Maria Bispo, D. F., Rivaldo Venâncio, D. C. & 4 others, Oliver George, P., Vandamme, AM., Luiz Carlos, J. A. & de Oliveira, T., 8 May 2019, In : PLoS Neglected Tropical Diseases. Vol. 13, n.º 5, p. e0007231-e0007246 15 p., e0007231.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Earlier initiation of antiretroviral treatment coincides with an initial control of the HIV-1 sub-subtype F1 outbreak among men-having-sex-with-men in Flanders, Belgium

Vinken, L., Katrien, F., Cuypers, L., Alexiev, I., Balotta, C., Laurent, D., Carole, S-D., Sergio Garcìa, R., Gomes, P., Incardona, F., Kaiser, R., Jean, R., Murat, S., Paraschiv, S., Paredes, R., Martine F., P., Anders B., S., Ellen, V., Vandamme, AM., Sigi, V. D. W. & 5 others, , Marc A., V. R., Chris, V., Tanja, S., Lemey, P. & van Laethem, K., 26 Mar 2019, In : Frontiers in Microbiology. Vol. 10, p. 613-626 13 p., 613.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Genome Detective: an automated system for virus identification from high-throughput sequencing data

Michael, V., Yumna, M., Sam, N., Vagner S., F., Yoika, G., Korneel, D., Raf, P., Luiz Carlos, J. A., Vanden Eynden, E., Vandamme, AM., Deforche, K. & de Oliveira, T., 1 Mar 2019, In : Bioinformatics. Vol. 35, n.º 5, p. 871-873 3 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The effect of primary drug resistance on CD4+ cell decline and the viral load set-point in HIV-positive individuals before the start of antiretroviral therapy

Anna, S., Torti, C., Alessandro, C-L., Vandamme, AM., Zazzi, M., Hellen, S., Luca, A. D., Anna Maria Aria, G., Anders B., S., Lidia, R., Laura, M., Simona, D. G., Andrea, G. & Giuseppe, L., 1 Feb 2019, In : AIDS. Vol. 33, n.º 2, p. 315-326 11 p.

Research output: Contribution to journalArticle

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

Tetyana I., V., Louis, D. P., Pineda-Peña, AC., Denise, K., Lemey, P., Vandamme, AM., Gomes, P., Camacho, R. J., Oliver George, P., Abecasis, AB. & Faria, N. R., 19 Jun 2019, In : Journal of Infectious Diseases. Vol. 220, n.º 2, p. 233-243 10 p., jiz085.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2018

Expert consensus statement on the science of HIV in the context of criminal law

F., B-S., S. S., A. K., Albert, J., L., B., C., B., P., C., A., C., B., G., Grulich, A., A., K., N., K., M. R., L., K. M., E. F., S., M., J. S. G., M., P., M., V., P., Vandamme, AM., B., Y. & P., G-F., 25 Jul 2018, In : Journal Of The International Aids Society. p. p. 1-12 12 p., e25161.

Research output: Contribution to journalArticle

Open Access
18 Citations (Scopus)

HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

Pineda-Peña, A. C., Theys, K., Stylianou, D. C., Demetriades, I., Puchhammer, E., Vandamme, A. M., Aleksiev, I., Lepej, S. Z., Linka, M., Fonager, J., Liitsola, K., Kaiser, R., Hamouda, O., Paraskevis, D., Coughlan, S., Grossman, Z., Mor, O., Zazzi, M., Griskevicius, A., Lipnickiene, V. & 17 others, Devaux, C., Boucher, C., Hofstra, M., Wensing, A., Bakken-Kran, A. M., Horban, A., Camacho, R., Paraschiv, S., Otelea, D., Stanojevic, M., Stanekova, D., Poljak, M., Garcia, F., Paredes, R., Albert, J., Abecasis, A. B. & Kostrikis, L. G., 1 Dec 2018, In : Scientific Reports. 8, 1, 1702.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Predictors of non adherence to antiretroviral therapy at an urban HIV care and treatment center in Tanzania

Raphael Z., S., Mosha, F., Said, A., Appolinary R., K., Guerino E., C. G. E., Vercauteren, J., Van Wijngaerden, E., Eligius Francis, L. & Vandamme, AM., 2018, In : Drug, Healthcare and Patient Safety. Vol. 10, p. 79-88 10 p.

Research output: Contribution to journalArticle

State of the antiretroviral therapy in human immunodeficiency virus drug resistance: Science and technology knowledge gap

Boucher, C. A. B., MR, B., Geretti, A. M., Chien Ching, H., Kaiser, R., Anne Geneviève, M., Anca, S-C., Jean, V. W., Patrick K., D. & Vandamme, AM., 15 Jun 2018, In : Aids Reviews. Vol. 20, n.º 1, p. p. 26-41 17 p., n.º 1.

Research output: Contribution to journalArticle

2 Citations (Scopus)

State of the antiretroviral therapy in human immunodeficiency virus drug resistance: Surveillance and regional gaps

Boucher, C. A. B., MR, B., Chien Ching, H., Kaiser, R., Anne Geneviève, M., Jean, V. W., Patrick K., D. & Vandamme, AM., 15 Jun 2018, In : Aids Reviews. Vol. 20, n.º 1, p. 42-56 15 p.

Research output: Contribution to journalArticle

Time to harmonize dengue nomenclature and classification

Cuypers, L., Pieter J.K., L., Peter, S., Nowé, A., Jorge Luis, M-J., Luiz Carlos, J. A., Vandamme, AM., Gilberto A., S. & Theys, K., 18 Oct 2018, In : VIRUSES-BASEL. Vol. 10, n.º 10, p. 569-576 7 p., 569.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
2017

A36 Prevalence of HIV-1 subtypes in Slovenia with an emphasis on molecular and phylogenetic investigation of subtype A

Mlakar, J., Lunar, M. M., Abecasis, A. B., Vandamme, A-M., Tomažič, J., Vovko, T. D., Pečavar, B., Volčanšek, G. & Poljak, M., Mar 2017, In : Virus evolution. 3, Suppl 1

Research output: Contribution to journalArticle

Open Access
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A Fashi lymphoproliferative phenotype reveals non-apoptotic fas signaling in HTLV-1-associated neuroinflammation

Menezes, S. M., Leal, F. E., Dierckx, T., Khouri, R., Decanine, D., Silva-Santos, G., Schnitman, S. V., Kruschewsky, R., López, G., Alvarez, C., Talledo, M., Gotuzzo, E., Nixon, D. F., Vercauteren, J., Brassat, D., Liblau, R., Vandamme, A. M., Galvão-Castro, B. & Van Weyenbergh, J., 14 Feb 2017, In : Frontiers in Immunology. 8, FEB, 97.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)

Exploring resistance pathways for first-generation NS3/4A protease inhibitors boceprevir and telaprevir using Bayesian network learning

Cuypers, L., Libin, P., Schrooten, Y., Theys, K., Di Maio, V. C., Cento, V., Lunar, M. M., Nevens, F., Poljak, M., Ceccherini-Silberstein, F., Nowé, A., Van Laethem, K. & Vandamme, A. M., 1 Sep 2017, In : Infection, Genetics and Evolution. Vol. 53, p. p. 15-23 9 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

IFN-beta induces greater antiproliferative and proapoptotic effects and increased p53 signaling compared with IFN-alpha in PBMCs of Adult T-cell Leukemia/Lymphoma patients

Dierckx, T., Khouri, R., Menezes, S. M., Decanine, D., Farre, L., Bittencourt, A., Vandamme, A. M. & Van Weyenbergh, J., 27 Jan 2017, In : BLOOD CANCER JOURNAL. Vol. 7, n.º 1, p. e519-e523 4 p., e519.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)

Implications of hepatitis C virus subtype 1a migration patterns for virus genetic sequencing policies in Italy

Cuypers, L., Vrancken, B., Fabeni, L., Marascio, N., Cento, V., Di Maio, V. C., Aragri, M., Pineda-Peña, A. C., Schrooten, Y., Van Laethem, K., Balog, D., Focà, A., Torti, C., Nevens, F., Perno, C. F., Vandamme, A. M. & Ceccherini-Silberstein, F., 7 Mar 2017, In : BMC Evolutionary Biology. Vol. 17, n.º 1, p. p. 70-80 10 p., 70.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
9 Downloads (Pure)

Large cluster outbreaks sustain the HIV epidemic among MSM in Quebec

Brenner, B. G., Ibanescu, R. I., Hardy, I., Stephens, D., Otis, J., Moodie, E., Grossman, Z., Vandamme, A. M., Roger, M. & Wainberg, M. A., 13 Mar 2017, In : AIDS. Vol. 31, n.º 5, p. p. 707-717 11 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Phylogenetic evidence for underreporting of male-to-male sex among human immunodeficiency virus–infected donors in the Netherlands and Flanders

van de Laar, T. J., Bezemer, D., van Laethem, K., Vandewalle, G., de Smet, A., van Wijngaerden, E., Claas, E. C., van Sighem, A. I., Vandamme, A. M., Compernolle, V. & Zaaijer, H. L., 1 May 2017, In : Transfusion. 57, 5, p. 1235-1247 13 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context

Libin, P., Vanden Eynden, E., Incardona, F., Nowé, A., Bezenchek, A., Sönnerborg, A., Vandamme, A-M., Theys, K., Baele, G. & EucoHIV study group, 26 Aug 2017, In : Bioinformatics.

Research output: Contribution to journalArticle

The epidemic emergence of HIV: What novel enabling factors were involved

Sousa, J. D., Müller, V. & Vandamme, AM., 2017, In : Future Virology.

Research output: Contribution to journalArticle

Zika virus genetic diversity and selective pressure: importance for diagnostics, vaccines and therapeutics

Cuypers, L., Libin, P., Abecasis, A., Vandamme, A. -M. & Theys, K., Oct 2017, In : Tropical medicine & international health : TM & IH. Vol. 22, p. p. 9

Research output: Contribution to journalArticle

2016

HCV1b genome evolution under selective pressure of the cyclophilin inhibitor alisporivir during the DEB-025-HCV-203 phase II clinical trial

Cuypers, L., Snoeck, J., Kerremans, L., Libin, P., Crabbé, R., Van Dooren, S., Vuagniaux, G. & Vandamme, A. M., 1 Oct 2016, In : Infection Genetics And Evolution. 44, p. 169-181 13 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

On the contribution of Angola to the initial spread of HIV-1

Pineda-Peña, A-C., Ferreira, J. V., Sousa, J. D., Theys, K., Bártolo, I., Leitner, T., Taveira, N., Vandamme, A-M. & Abecasis, A. B., Dec 2016, In : Infection Genetics And Evolution. 46, p. 219-222 4 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Quantifying next generation sequencing sample pre-processing bias in HIV-1 complete genome sequencing

Vrancken, B., Trovão, N. S., Baele, G., Van Wijngaerden, E., Vandamme, A. M., van Laethem, K. & Lemey, P., 7 Jan 2016, In : VIRUSES-BASEL. 8, 1

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
12 Citations (Scopus)
2015

A new ensemble coevolution system for detecting HIV-1 protein coevolution

Li, G., Theys, K., Verheyen, J., Pineda-Peña, A. C., Khouri, R., Piampongsant, S., Eusébio, M., Ramon, J. & Vandamme, A. M., 7 Jan 2015, In : Biology Direct. 10, 1, 1.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
1 Downloads (Pure)

An integrated map of HIV genome-wide variation from a population perspective

Li, G., Piampongsant, S., Faria, R. N., Voet, A., Pineda-Peña, A. C., Khouri, R., Lemey, P., Vandamme, A. M. & Theys, K., 15 Feb 2015, In : Retrovirology. 12, 1, 18.

Research output: Contribution to journalArticle

Open Access
File
53 Citations (Scopus)
2 Downloads (Pure)

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

Winand, R., Theys, K., Eusébio, M., Aerts, J., Camacho, R. J., Gomes, P., Suchard, M. A., Vandamme, A. M. & Abecasis, A. B., 24 Sep 2015, In : AIDS. 29, 15, p. 2045-2052 8 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Bridging epidemiology with population genetics in a low incidence MSM-driven HIV-1 subtype B epidemic in Central Europe

Lunar, M. M., Vandamme, A. M., Tomažič, J., Karner, P., Vovko, T. D., Pečavar, B., Volčanšek, G., Poljak, M. & Abecasis, A. B., 15 Feb 2015, In : BMC Infectious Diseases. 15, 1, 65.

Research output: Contribution to journalArticle

7 Citations (Scopus)

CRF19_cpx is an evolutionary fit HIV-1 variant exclusively associated with rapid progression to AIDS in Cuba.

Kourí, V., Khouri, R., Alemán, Y., Vercauteren, J., Pineda-Peña, AC., Theys, K., Megens, S., Moutschen, M., Pfeifer, N., Weyenbergh, J. V., Pérez, A. B., Pérez, J., Pérez, L., Van Laethem, K. & Vandamme, AM., 2015, In : EBioMedicine. 2

Research output: Contribution to journalArticle

Open Access
File
33 Citations (Scopus)
3 Downloads (Pure)

Discovery and characterization of auxiliary proteins encoded by type 3 simian T-cell lymphotropic viruses

Turpin, J., Journo, C., Ko, N. L., Sinet, F., Carpentier, A., Galioot, A., Edwards, D., Vandamme, A. M., Gazzolo, L., Dodon, M. D., Gessain, A., Kashanchi, F., Balansard, I., Lacoste, R. & Mahieux, R., 2015, In : Journal of Virology. 89, 2, p. 931-951 21 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
15 Downloads (Pure)

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

Rhee, S. Y., Blanco, J. L., Jordan, M. R., Taylor, J., Lemey, P., Varghese, V., Hamers, R. L., Bertagnolio, S., de Wit, T. F. R., Aghokeng, A. F., Albert, J., Avi, R., Avila-Rios, S., Bessong, P. O., Brooks, J. I., Boucher, C. A. B., Brumme, Z. L., Busch, M. P., Bussmann, H., Chaix, M. L. & 53 others, Chin, B. S., D’Aquin, T. T., De Gascun, C. F., Derache, A., Descamps, D., Deshpande, A. K., Djoko, C. F., Eshleman, S. H., Fleury, H., Frange, P., Fujisaki, S., Harrigan, P. R., Hattori, J., Holguin, A., Hunt, G. M., Ichimura, H., Kaleebu, P., Katzenstein, D., Kiertiburanakul, S., Kim, J. H., Kim, S. S., Li, Y., Lutsar, I., Morris, L., Ndembi, N., NG, K. P., Paranjape, R. S., Peeters, M., Poljak, M., Price, M. A., Ragonnet-Cronin, M. L., Reyes-Terán, G., Rolland, M., Sirivichayakul, S., Smith, D. M., Soares, M. A., Soriano, V. V., Ssemwanga, D., Stanojevic, M., Stefani, M. A., Sugiura, W., Sungkanuparph, S., Tanuri, A., Tee, K. K., Truong, H. H. M., van de Vijver, D. A. M. C., Vidal, N., Yang, C., Yang, R., Yebra, G., Ioannidis, J. P. A., Vandamme, A. M. & Shafer, R. W., 1 Apr 2015, In : PLoS Medicine. 12, 4, e1001810.

Research output: Contribution to journalArticle

Open Access
File
144 Citations (Scopus)

Global dispersal pattern of HIV type 1 subtype CRF01-AE: A genetic trace of human mobility related to heterosexual sexual activities centralized in southeast Asia

Angelis, K., Albert, J., Mamais, I., Magiorkinis, G., Hatzakis, A., Hamouda, O., Struck, D., Vercauteren, J., Wensing, A. M. J., Alexiev, I., Åsjö, B., Balotta, C., Camacho, R. J., Coughlan, S., Griskevicius, A., Grossman, Z., Horban, A., Kostrikis, L. G., Lepej, S., Liitsola, K. & 14 others, Linka, M., Nielsen, C., Otelea, D., Paredes, R., Poljak, M., Puchhammer-Stöckl, E., Schmit, J. C., Sönnerborg, A., Staneková, D., Stanojevic, M., Boucher, C. A. B., Kaplan, L., Vandamme, A. M. & Paraskevis, D., 1 Jun 2015, In : Journal of Infectious Diseases. 211, 11, p. 1735-1744 10 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)

Performance of an in-house human immunodeficiency virus type 1 genotyping system for assessment of drug resistance in Cuba

Alemán, Y., Vinken, L., Kourí, V., Pérez, L., Álvarez, A., Abrahantes, Y., Fonseca, C., Pérez, J., Correa, C., Soto, Y., Schrooten, Y., Vandamme, A. M. & Van Laethem, K., 11 Feb 2015, In : PlosOne. 10, 2, e0117176.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)

Predicted residual activity of rilpivirine in HIV-1 infected patients failing therapy including NNRTIs efavirenz or nevirapine

Theys, K., Camacho, R. J., Gomes, P., Vandamme, A. M. & Rhee, S. Y., 1 Jun 2015, In : Clinical Microbiology And Infection. 21, 6, p. 607.e1-607.e8

Research output: Contribution to journalArticle

12 Citations (Scopus)
2014

A near-full length genotypic assay for HCV1b

Cuypers, L., Snoeck, J., Vrancken, B., Kerremans, L., Vuagniaux, G., Verbeeck, J., Nevens, F., Camacho, R. J., Vandamme, A. M. & Van Dooren, S., 1 Dec 2014, In : Journal Of Virological Methods. 209, p. 126-135 10 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

CD80+ and CD86+ B cells as biomarkers and possible therapeutic targets in HTLV-1 associated myelopathy/tropical spastic paraparesis and multiple sclerosis

Menezes, S. M., Decanine, D., Brassat, D., Khouri, R., Schnitman, S. V., Kruschewsky, R., López, G., Alvarez, C., Talledo, M., Gotuzzo, E., Vandamme, A. M., Galvão-Castro, B., Liblau, R. & Weyenbergh, J. V., 29 Jan 2014, In : Journal of Neuroinflammation. 11, 18.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Characterization of amino acids Arg, Ser and Thr at position 70 within HIV-1 reverse transcriptase

Megens, S., De Wit, S., Bernatchez, J., Dekeersmaeker, N., Vinken, L., Covens, K., Theys, K., Camacho, R. J., Vandamme, A. M., Götte, M. & Van Laethem, K., 1 Oct 2014, In : Acta Clinica Belgica. 69, 5, p. 348-357 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Clinical and virological response to antiretroviral drugs among HIV patients on first-line treatment in Dar-es-Salaam, Tanzania

Mosha, F., Ledwaba, J., Ndugulile, F., Ng'ang'a, Z., Nsubuga, P., Morris, L., Kasubi, M., Swai, A., Vercauteren, J. & Vandamme, A. M., 2014, In : Journal Of Infection In Developing Countries. 8, 7, p. 845-852 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes

Li, G., Verheyen, J., Theys, K., Piampongsant, S., Van Laethem, K. & Vandamme, A. M., 25 Sep 2014, In : Retrovirology. 11, 1, 79.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Horizontal gene transfer from human host to HIV-1 reverse transcriptase confers drug resistance and partly compensates for replication deficits

Megens, S., Vaira, D., De Baets, G., Dekeersmaeker, N., Schrooten, Y., Li, G., Schymkowitz, J., Rousseau, F., Vandamme, A. M., Moutschen, M. & Van Laethem, K., 2014, In : Virology. 456-457, 1, p. 310-318 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

Frentz, D., Van de Vijver, D. A. M. C., Abecasis, A. B., Albert, J., Hamouda, O., Jørgensen, L. B., Ku¨cherer, C., Struck, D., Schmit, J. C., Vercauteren, J., A˚sjo¨, B., Balotta, C., Beshkov, D., Camacho, R. J., Clotet, B., Coughlan, S., Griskevicius, A., Grossman, Z., Horban, A., Kolupajeva, T. & 256 others, Korn, K., Kostrikis, L. G., Liitsola, K., Linka, M., Nielsen, C., Otelea, D., Paraskevis, D., Paredes, R., Poljak, M., Puchhammer-Sto¨ckl, E., So¨nnerborg, A., Stanekova, D., Stanojevic, M., Van Wijngaerden, E., Wensing, A. M. J., Boucher, C. A. B., Puchhammer-Stockl, E., Sarcletti, M., Schmied, B., Geit, M., Balluch, G., Vandamme, A. M., Vercauteren, J., Derdelinckx, I., Sasse, A., Bogaert, M., Ceunen, H., De Roo, A., De Wit, S., Echahidi, F., Fransen, K., Goffard, J. C., Goubau, P., Goudeseune, E., Yombi, J. C., Lacor, P., Liesnard, C., Moutschen, M., Pierard, D., Rens, R., Schrooten, Y., Vaira, D., Vandekerckhove, L. P. R., Van den Heuvel, A., Van Der Gucht, B., Van Ranst, M., Van Wijngaerden, E., Vandercam, B., Vekemans, M., Verhofstede, C., Clumeck, N., Van Laethem, K., Kostrikis, L., Demetriades, I., Kousiappa, I., Demetriou, V., Hezka, J., Bruckova, M., Linka, M., Machala, L., Nielsen, C., Jørgensen, L. B., Gerstoft, J., Mathiesen, L., Pedersen, C., Nielsen, H., Laursen, A., Kvinesdal, B., Salminen, M., Ristola, M., Liitsola, K., Suni, J., Sutinen, J., Korn, K., Ku¨cherer, C., Berg, T., Braun, P., Poggensee, G., Da¨umer, M., Eberle, J., Hamouda, O., Heiken, H., Kaiser, R., Knechten, H., Mu¨ller, H., Neifer, S., Schmidt, B., Walter, H., Gunsenheimer-Bartmeyer, B., Harrer, T., Paraskevis, D., Hatzakis, A., Magiorkinis, E., Hatzitheodorou, E., Haida, C., Zavitsanou, A., Magiorkinis, G., Lazanas, M., Chini, M., Magafas, N., Tsogas, N., Paparizos, V., Kourkounti, S., Antoniadou, A., Papadopoulos, A., Panagopoulos, P., Poulakou, G., Sakka, V., Chryssos, G., Drimis, S., Gargalianos, P., Lelekis, M., Chilomenos, G., Psichogiou, M., Daikos, G. L., Panos, G., Haratsis, G., Kordossis, T., Kontos, A., Koratzanis, G., Theodoridou, M., Mostrou, G., Spoulou, V., Coughlan, S., De Gascun, C., Byrne, C., Duffy, M., Bergin, C., Reidy, D., Farrell, G., Lambert, J., O'Connor, E., Rochford, A., Low, J., Coakely, P., O'Dea, S., Hall, W., Grossman, Z., Levi, I., Chemtob, D., Balotta, C., Riva, C., Mussini, C., Caramma, I., Capetti, A., Colombo, M. C., Rossi, C., Prati, F., Tramuto, F., Vitale, F., Ciccozzi, M., Angarano, G., Rezza, G., Schmit, J. C., Struck, D., Hemmer, R., Arendt, V., Staub, T., Schneider, F., Roman, F., Wensing, A. M. J., Boucher, C. A. B., van de Vijver, D. A. M., van Kessel, A., van Bentum, P. H. M., Brinkman, K., op de Coul, E. L., van der Ende, M. E., Hoepelman, M., van Kasteren, M., Juttmann, J., Kuipers, M., Langebeek, N., Richter, C., Santegoets, M. W. J., Schrijnders-Gudde, L., Schuurman, R., van de Ven, B. J. M., A˚sjo¨, B., Ormaasen, V., Aavitsland, P., Horban, A., Stanczak, J. J., Stanczak, G. P., Firlag-Burkacka, E., Wiercinska-Drapalo, A., Jablonowska, E., Malolepsza, E., Leszczyszyn-Pynka, M., Szata, W., Camacho, R., Palma, C., Borges, F., Paixa&tild;o, T., Duque, V., Arau´jo, F., Jevtovic, D., Salemovic, D., Stanekova, D., Habekova, M., Mokras, M., Truska, P., Poljak, M., Lunar, M., Babic, D., Tomazic, J., Vidmar, L., Vovko, T., Karner, P., Clotet, B., Domingo, P., Galindo, M. J., Miralles, C., del Pozo, M. A., Ribera, E., Iribarren, J. A., Ruiz, L., de la Torre, J., Vidal, F., Garcia, F., Paredes, R., Albert, J., Heidarian, A., Aperia-Peipke, K., Axelsson, M., Mild, M., Karlsson, A., So¨nnerborg, A., Thalme, A., Nave´r, L., Bratt, G., Karlsson, A., Blaxhult, A., Gissle´n, M., Svennerholm, B., Bergbrant, I., Bjo¨rkman, P., Sa¨ll, C., Mellgren, A., Lindholm, A., Kuylenstierna, N., Montelius, R., Azimi, F., Johansson, B., Carlsson, M., Johansson, E., Ljungberg, B., Ekvall, H., Strand, A., Ma¨kitalo, S., o¨berg, S., Holmblad, P., Ho¨fer, M., Holmberg, H., Josefson, P. & Ryding, U., 2014, In : BMC Infectious Diseases. 14, 1, 407.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Patterns of transmitted HIV drug resistance in Europe vary by risk group

Frentz, D., Van De Vijver, D., Abecasis, A., Albert, J., Hamouda, O., Jørgensen, L., Kücherer, C., Struck, D., Schmit, J. C., Vercauteren, J., Åsjö, B., Balotta, C., Bergin, C., Beshkov, D., Camacho, R., Clotet, B., Griskevicius, A., Grossman, Z., Horban, A., Kolupajeva, T. & 15 others, Korn, K., Kostrikis, L., Linka, K. L. M., Nielsen, C., Otelea, D., Paraskevis, D., Paredes, R., Poljak, M., Puchhammer-Stöckl, E., Sönnerborg, A., Stanekova, D., Stanojevic, M., Vandamme, A. M., Boucher, C. & Wensing, A., 10 Apr 2014, In : PlosOne. 9, 4, e94495.

Research output: Contribution to journalArticle

26 Citations (Scopus)

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates

Vrancken, B., Rambaut, A., Suchard, M. A., Drummond, A., Baele, G., Derdelinckx, I., Van Wijngaerden, E., Vandamme, A. M., Van Laethem, K. & Lemey, P., 2014, In : PLoS Computational Biology. 10, 4, e1003505.

Research output: Contribution to journalArticle

49 Citations (Scopus)

Trends and predictors of transmitted drug resistance (TDR) and clusters with TDR in a local Belgian HIV-1 epidemic

Pineda-Peña, A. C., Schrooten, Y., Vinken, L., Ferreira, F., Li, G., Trovão, N. S., Khouri, R., Derdelinckx, I., De Munter, P., Kuc̈herer, C., Kostrikis, L. G., Nielsen, C., Littsola, K., Wensing, A., Stanojevic, M., Paredes, R., Balotta, C., Albert, J., Boucher, C., Gomez-Lopez, A. & 5 others, Van Wijngaerden, E., Van Ranst, M., Vercauteren, J., Vandamme, A. M. & Van Laethem, K., 8 Jul 2014, In : PlosOne. 9, 7, e101738.

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28 Citations (Scopus)
Open Access
16 Citations (Scopus)

Declining prevalence of HIV-1 drug resistance in antiretroviral treatment-exposed individuals in Western Europe.

De Luca, A., Dunn, D. ., Zazzi, M., Camacho, R., Torti, C., Fanti, I. ., Sonnerborg, A., Codoñer, F. M. ., Van Laethem, K., Vandamme, A., Bansi, L. ., Ghisetti, V. ., Van De Vijver, D. A. M. C. ., Asboe, D. ., Prosperi, M. C. F. . & Di Giambenedetto, S. ., 1 Jan 2013, In : The Journal of infectious diseases. 207, 8, p. 1216-20

Research output: Contribution to journalArticle

Open Access
39 Citations (Scopus)